CF834798

Overview
NameCF834798
Unique NameCF834798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.022e-50
Identity = 94/149 (63.09%), Postives = 123/149 (82.55%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q  RD IM+EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I++FY+  IEE+P+++  L
Sbjct:  247 DYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADIGAL 395          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.003e-49
Identity = 94/149 (63.09%), Postives = 121/149 (81.21%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + L DLY+++++TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  I E+P+++  L
Sbjct:  247 DYKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLREQKFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEKFYSTQITEMPADIGSL 395          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.003e-49
Identity = 93/149 (62.42%), Postives = 120/149 (80.54%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            EWK +TLCDLY++L ITQ VIF NT++KVDWL+ K+   +  V++ HGDM Q+ RD +M +FRSGSSRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+TR++   L  I+K Y++ I+ +P+++  L
Sbjct:  249 EWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLKSIEKHYSIKIKPMPADIDSL 397          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 92/149 (61.74%), Postives = 124/149 (83.22%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + L DLY+++++TQ+VIF NTRRKV+ LT+++R  + TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKG+AINFVT  D   + ++++FY+  IEELPS++++L
Sbjct:  246 QYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMRELERFYSTQIEELPSSISEL 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.920e-49
Identity = 92/149 (61.74%), Postives = 118/149 (79.19%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            EWK +TLCD+Y++L ITQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   L +I+KFY++ I  +P+N A+L
Sbjct:  250 EWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMPANFAEL 398          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.920e-49
Identity = 92/149 (61.74%), Postives = 118/149 (79.19%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            EWK +TLCD+Y++L ITQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   L +I+KFY++ I  +P+N A+L
Sbjct:  250 EWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMPANFAEL 398          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.920e-49
Identity = 90/149 (60.40%), Postives = 118/149 (79.19%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            EWK +TLCDLY++L ITQ VIF NTR+KVDWL+ K+   + +VS+ HGDM Q  RD +M +FRSG +RVLI+TD+ ARGIDVQQ+SLVINYD+P   ENY+HRIGRSGRFGRKGVAINF+T+++   L +I+  Y + I+  P+N+ +L
Sbjct:  249 EWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEEL 397          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.813e-49
Identity = 92/150 (61.33%), Postives = 118/150 (78.67%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            +WK +TLCDLY+ L ITQ+VIF NT+ KV+WL  +MR  + TV+A HGDM Q  RD IM+EFRSGS+RVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKG AIN +T  D+  L  +Q +Y+  I E+P++++ ++
Sbjct:  248 DWKFDTLCDLYDNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKSLQHYYSTKIREVPADLSKIM 397          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 88/149 (59.06%), Postives = 120/149 (80.54%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            EWK +TLCD+Y++L ITQ VIF N+++KVDWL  K++  +  V + HGDM Q+ RD +M EFR+G SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   + +I+K+Y + ++ +P+++++L
Sbjct:  250 EWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEKYYKIKVKPMPADLSEL 398          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 92/150 (61.33%), Postives = 117/150 (78.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E KL+TL DLYET++I QSVIF NTRRKVDW+ +K+   +HTVS+ H +M ++ R+ +M  FRSGSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT  D  +L +I+  Y+  I+ELP + A  L
Sbjct:  252 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEAHYHTQIDELPVDFAAYL 401          
The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PICST2.022e-5063.09ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_LODEL1.003e-4963.09ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
FAL1_ASHGO1.003e-4962.42ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A_KLULA1.311e-4961.74ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
FAL1_YEAST2.920e-4961.74ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS72.920e-4961.74ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_KLULA2.920e-4960.40ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
FAL1_PICGU3.813e-4961.33ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_CANGA1.109e-4859.06ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A_LEIMA2.472e-4861.33Probable eukaryotic initiation factor 4A OS=Leishm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bp
TAGAAATAAATTGATAACAAAAGGACATAAAATACAAAGACCCCCCTTTA
ACAAAAATTTCAATAATTATAAACCCACCACAGTGCAGCTTGCAAATGTG
CATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATT
TAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGG
AGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTT
CTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCA
ACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATC
AAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCT
TTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGT
TGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAAT
ACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGC
GAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGA
GTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTC
GACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTATGGCCAGAG
TCTCATAAAGATCACAGAGGGTTTCAAGCTTCCATTCT
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