CF834798

Overview
NameCF834798
Unique NameCF834798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 92/150 (61.33%), Postives = 117/150 (78.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E KL+TL DLYET++I QSVIF NTRRKVDW+ +K+   +HTVS+ H +M ++ R+ +M  FRSGSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT  D  +L +I+  Y+  I+ELP + A  L
Sbjct:  252 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEAHYHTQIDELPVDFAAYL 401          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 91/149 (61.07%), Postives = 122/149 (81.88%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + L DLY+++++TQ+VIF NTRRKV+ LT ++ + + TVS+ + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINF+  +D + L ++++FY+  IEELPS++  L
Sbjct:  246 QFKYDCLTDLYDSISVTQAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVNEDVQALRELEQFYSTQIEELPSDIGTL 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 92/150 (61.33%), Postives = 117/150 (78.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E KL+TL DLYET++I QSVIF NTRRKVDW+ +K+   +HTVS+ H +M ++ R+ +M  FRSGSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT  D  +L +I+  Y+  I+ELP + A  L
Sbjct:  252 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEGHYHTQIDELPVDFAAYL 401          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.192e-48
Identity = 93/150 (62.00%), Postives = 116/150 (77.33%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E KL+TL DLYET++I QSVIF NTRRKVDWL  ++ S +HTVS  H +M +  R+ +M  FR+GSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT+ D  +L +I+  Y+  IEELP + A  L
Sbjct:  253 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIEELPVDFAAYL 402          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.392e-48
Identity = 93/149 (62.42%), Postives = 119/149 (79.87%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            E+K + L DLY+++++TQ+VIF NTRRKV+ LT ++     TVSA + D+ Q  RD IM+EFR+GSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAIN VT  D   + ++++FY+  IEELP+N+ADL
Sbjct:  246 EYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGDMRELERFYSTQIEELPANIADL 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.951e-47
Identity = 87/149 (58.39%), Postives = 116/149 (77.85%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            +WK +TLCDLY++L ITQ VIF NT++KVDWL+ K+   +  V + HGDM Q  R+ +M +FRSG SRVLI+TD+ ARGIDVQQVSLVINYD+P   ENY+HRIGRSGRFGRKGVAINF+T  D   + +I+K+Y + I  +P++++ +
Sbjct:  250 DWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKMKEIEKYYRIKISPVPADLSTI 398          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 90/150 (60.00%), Postives = 115/150 (76.67%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E KL+TL DLYET++I QSVIF NTRRKVDWL  ++   +HTVS  H +M +  R+ +M  FR+GSSRVL+TTDL+ARGIDV  V++VIN+DLPT  E+YLHRIGR GR+GRKGVAINFVT+ D  +L +I+  Y+  I+ELP + A  L
Sbjct:  253 EHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIDELPVDFAAYL 402          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF413_TOBAC (Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.313e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = -2
Query:  462 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 737
            EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD
Sbjct:  264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 89/146 (60.96%), Postives = 110/146 (75.34%), Query Frame = -2
Query:  300 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNV 737
            EWK +TLCDLY  L I Q++IF NTR+KVDWLT+KMRS +  VS+ HGD  Q  RD IM +FRS  SRVLI +D+ ARGIDVQ VS VINYD+P  PE Y+HRIGR+GRFGR+GVAINFV   D + L DI++ Y   I E+P+++
Sbjct:  246 EWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMPADL 391          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.230e-39
Identity = 87/148 (58.78%), Postives = 109/148 (73.65%), Query Frame = -2
Query:  288 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 731
            KL+ LC L++T+ IT+S+IFVNTR     LT+K+R + +TVSA HG + Q  RD  ++EF+SGSSR+LITTDL  RGIDV +    I YDLPTQP  YL  + +SG+ GRKGVAI+F+T  DER+   IQKF N  IEELPSNVADLL
Sbjct:  272 KLDKLCGLFDTMEITRSIIFVNTRHHAKSLTEKIRGKGYTVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPVCYLRHV-QSGQHGRKGVAISFITSTDERVFSTIQKFCNTQIEELPSNVADLL 416          
The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_LEIIN2.472e-4861.33Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_CANGA2.472e-4861.07ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
IF4A_LEIBR3.228e-4861.33Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_TRYBB7.192e-4862.00Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_ASHGO9.392e-4862.42ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
FAL1_VANPO7.951e-4758.39ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A_TRYCR1.771e-4660.00Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF413_TOBAC2.313e-46100.00Eukaryotic initiation factor 4A-13 (Fragment) OS=N... [more]
RH34_ARATH1.148e-4560.96DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A2_ORYSJ1.230e-3958.78Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bp
TAGAAATAAATTGATAACAAAAGGACATAAAATACAAAGACCCCCCTTTA
ACAAAAATTTCAATAATTATAAACCCACCACAGTGCAGCTTGCAAATGTG
CATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATT
TAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGG
AGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTT
CTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCA
ACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATC
AAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCT
TTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGT
TGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAAT
ACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGC
GAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGA
GTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTC
GACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTATGGCCAGAG
TCTCATAAAGATCACAGAGGGTTTCAAGCTTCCATTCT
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