CF834798

Overview
NameCF834798
Unique NameCF834798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.541e-66
Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  258 EWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.541e-66
Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  258 EWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.541e-66
Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  258 EWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65
Identity = 121/150 (80.67%), Postives = 133/150 (88.67%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  249 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 398
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65
Identity = 121/150 (80.67%), Postives = 133/150 (88.67%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  257 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65
Identity = 121/150 (80.67%), Postives = 133/150 (88.67%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  257 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65
Identity = 121/150 (80.67%), Postives = 133/150 (88.67%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  257 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.305e-65
Identity = 121/150 (80.67%), Postives = 133/150 (88.67%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  257 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.796e-65
Identity = 120/150 (80.00%), Postives = 132/150 (88.00%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGV IN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  257 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVTINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
[Close]
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.796e-65
Identity = 120/150 (80.00%), Postives = 132/150 (88.00%), Query Frame = -2 
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD T SA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  257 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_HUMAN1.541e-6680.67Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_CHICK1.541e-6680.67Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A2_BOVIN1.541e-6680.67Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
IF4A1_RABIT1.305e-6580.67Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PONAB1.305e-6580.67Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A1_MOUSE1.305e-6580.67Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_HUMAN1.305e-6580.67Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN1.305e-6580.67Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A1_PANTR3.796e-6580.00Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MACFA3.796e-6580.00Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bp
TAGAAATAAATTGATAACAAAAGGACATAAAATACAAAGACCCCCCTTTA
ACAAAAATTTCAATAATTATAAACCCACCACAGTGCAGCTTGCAAATGTG
CATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATT
TAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGG
AGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTT
CTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCA
ACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATC
AAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCT
TTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGT
TGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAAT
ACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGC
GAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGA
GTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTC
GACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTATGGCCAGAG
TCTCATAAAGATCACAGAGGGTTTCAAGCTTCCATTCT
back to top