CF834798

Overview
NameCF834798
Unique NameCF834798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:997..1690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = -2
Query:  354 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 680
            ++FV +  +   L  ++      V   H D  Q  RD  +  FR+G   VLI T LLARGID + V+LVINYD PT    Y+HRIGR+GR G KG A+ F T DD+ +L
Sbjct:  414 LVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 522          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  363 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 737
            E K+++L +L+  +   Q+++F N   +   L D + S+        G + Q+ R   M + +    RVLI+TDL +RGID ++V+LVIN D+P   E Y+HRIGR+GRFG  GVA+ +    +E
Sbjct:  261 EEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEE 385          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N
Sbjct:  241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N
Sbjct:  241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB2 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS223) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  306 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 680
            ++F  T+R  D L   + ++ +   A HGD+ Q  R+  +  FR G+  +L+ TD+ ARG+DV  V LVI+Y+LP   E ++HR GR+GR G+KG AI    +D  R +  I+K       ELPS
Sbjct:  365 IVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPS 488          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  330 VIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 680
            +IF N ++  + L  ++  +   D+TV   HG   Q  R+  +  FR G  ++LI TD+ ARGID+  VSLV+NY +  + + Y+HRIGR+GR G KG +  F+   D  +  D++KF N
Sbjct:  440 IIFANFKKACEELAYELSRKGFSDNTV--IHGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDDGDSEVFLDLKKFLN 557          
The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX52_BOVIN1.196e-1844.95Probable ATP-dependent RNA helicase DDX52 OS=Bos t... [more]
DDX20_DANRE1.196e-1837.60Probable ATP-dependent RNA helicase DDX20 OS=Danio... [more]
RHLB_SHESW1.563e-1837.50ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_SHEPC1.563e-1837.50ATP-dependent RNA helicase rhlB OS=Shewanella putr... [more]
RHLB_SHEB91.563e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB81.563e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB51.563e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB21.563e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RH9_ARATH1.563e-1839.20DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
PRP28_DEBHA1.563e-1838.33Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bp
TAGAAATAAATTGATAACAAAAGGACATAAAATACAAAGACCCCCCTTTA
ACAAAAATTTCAATAATTATAAACCCACCACAGTGCAGCTTGCAAATGTG
CATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATT
TAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGG
AGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTT
CTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCA
ACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATC
AAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCT
TTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGT
TGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAAT
ACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGC
GAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGA
GTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTC
GACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTATGGCCAGAG
TCTCATAAAGATCACAGAGGGTTTCAAGCTTCCATTCT
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