CF834798
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18 Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = -2 Query: 354 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 680 ++FV + + L ++ V H D Q RD + FR+G VLI T LLARGID + V+LVINYD PT Y+HRIGR+GR G KG A+ F T DD+ +L Sbjct: 414 LVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 522
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18 Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = -2 Query: 363 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 737 E K+++L +L+ + Q+++F N + L D + S+ G + Q+ R M + + RVLI+TDL +RGID ++V+LVIN D+P E Y+HRIGR+GRFG GVA+ + +E Sbjct: 261 EEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEE 385
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB2 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS223) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = -2 Query: 330 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 737 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = -2 Query: 306 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 680 ++F T+R D L + ++ + A HGD+ Q R+ + FR G+ +L+ TD+ ARG+DV V LVI+Y+LP E ++HR GR+GR G+KG AI +D R + I+K ELPS Sbjct: 365 IVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPS 488
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -2 Query: 330 VIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 680 +IF N ++ + L ++ + D+TV HG Q R+ + FR G ++LI TD+ ARGID+ VSLV+NY + + + Y+HRIGR+GR G KG + F+ D + D++KF N Sbjct: 440 IIFANFKKACEELAYELSRKGFSDNTV--IHGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDDGDSEVFLDLKKFLN 557 The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bpback to top |