CF834798

Overview
NameCF834798
Unique NameCF834798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:997..1690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.813e-52
Identity = 96/149 (64.43%), Postives = 124/149 (83.22%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q+ RD IM EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D  M+ +I+KFY+  IEE+P+N+ +L
Sbjct:  246 DFKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEKFYSTQIEEMPANIGEL 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 98/132 (74.24%), Postives = 114/132 (86.36%), Query Frame = -2
Query:  342 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 737
            +WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+
Sbjct:  251 DWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.072e-51
Identity = 96/150 (64.00%), Postives = 121/150 (80.67%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            +WK +TLCDLY+ L ITQ+VIF NT+ KV+WLTD+MR ++ TV A HGDM Q  RD IM +FRSG+SRVLI+TD+ ARGIDVQQ+SLVINYDLP   ENY+HRIGRSGRFGRKG AIN +T+ D   L  ++K+Y+  I+E+PSNV D++
Sbjct:  250 DWKFDTLCDLYDNLTITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKALEKYYSTKIKEMPSNVNDVM 399          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.072e-51
Identity = 94/150 (62.67%), Postives = 121/150 (80.67%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            +WK +TLCDLY+ L ITQ+VIF NT+ KV+WL D+M+ ++ TV A HGDM Q+ RD IM +FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKG AIN +T+DD   L + +K+Y+  I+E+P N+ D++
Sbjct:  250 DWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEFEKYYSTKIKEMPMNINDIM 399          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 99/150 (66.00%), Postives = 123/150 (82.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  245 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 99/150 (66.00%), Postives = 123/150 (82.00%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            E+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  245 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 96/150 (64.00%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  288 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 737
            +WK  TLCD+Y++L ITQ+VIF NT++KVD LT++MR  + TV++ HGDM Q  R+ I++ FRSG +RVLITTD+LARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFV   D R+L DI++FY+  I+E+P N A ++
Sbjct:  256 DWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 96/149 (64.43%), Postives = 123/149 (82.55%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + LCDLY+++++TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  247 DYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 95/149 (63.76%), Postives = 124/149 (83.22%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + L DLY+++++TQ+VIF NTRRKV+ LT K+   + TVS+ + D+ Q  RD+IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D   + +I+KFY+  IEELP++VA++
Sbjct:  246 QYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEKFYSTQIEELPADVAEM 394          
BLAST of CF834798 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 95/149 (63.76%), Postives = 121/149 (81.21%), Query Frame = -2
Query:  291 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 737
            ++K + LCDLY+++++TQ+VIF NTR KV++LT K++  + TVSA H D+ Q  RD IM EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  247 DYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
The following BLAST results are available for this feature:
BLAST of CF834798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PICGU4.813e-5264.43ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
FAL1_CHAGB6.285e-5274.24ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
FAL1_LODEL1.072e-5164.00ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
FAL1_CANAL1.072e-5162.67ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
IF4A_YEAST4.074e-5166.00ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS74.074e-5166.00ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_DICDI4.074e-5164.00Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A_CANAL5.321e-5164.43ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_VANPO1.548e-5063.76ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_DEBHA1.548e-5063.76ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834798 ID=CF834798; Name=CF834798; organism=Citrus sinensis; type=EST; length=738bp
TAGAAATAAATTGATAACAAAAGGACATAAAATACAAAGACCCCCCTTTA
ACAAAAATTTCAATAATTATAAACCCACCACAGTGCAGCTTGCAAATGTG
CATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATT
TAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGG
AGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTT
CTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCA
ACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATC
AAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCT
TTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGT
TGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAAT
ACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGC
GAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGA
GTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTC
GACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTATGGCCAGAG
TCTCATAAAGATCACAGAGGGTTTCAAGCTTCCATTCT
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