CF834799

Overview
NameCF834799
Unique NameCF834799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:981..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.548e-79
Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 3 
Query:    6 LRRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            + + EWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  261 VEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF415_TOBAC (Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.464e-79
Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 3 
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERML DIQ+FYNVVIEELP+NVADLL
Sbjct:  264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIEELPANVADLL 413
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.614e-78
Identity = 145/150 (96.67%), Postives = 148/150 (98.67%), Query Frame = 3 
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT DDERML DIQ+FYNVVIEELP+NVADLL
Sbjct:  264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPANVADLL 413
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.754e-78
Identity = 141/150 (94.00%), Postives = 149/150 (99.33%), Query Frame = 3 
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            +WKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER++FD+Q+FYNV +EELP+NVADLL
Sbjct:  261 DWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYNVTVEELPANVADLL 410
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.596e-78
Identity = 144/150 (96.00%), Postives = 148/150 (98.67%), Query Frame = 3 
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR+RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV +DDERML DIQ+FYNVVIEELP+NVADLL
Sbjct:  264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYNVVIEELPANVADLL 413
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.367e-77
Identity = 142/150 (94.67%), Postives = 148/150 (98.67%), Query Frame = 3 
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINF+T +DERM+ DIQ+FYNVV+EELPSNVADLL
Sbjct:  265 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPSNVADLL 414
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 3 
Query:    6 LRRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            + R EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 3 
Query:    6 LRRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            + R EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 3 
Query:    6 LRRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            + R EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 3 
Query:    6 LRRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 467
            + R EWKL+TLCDLYETL ITQ+VIF+NTRRKVDWLT+KM +RD TVSA HGDMDQ  RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  255 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 408
The following BLAST results are available for this feature:
BLAST of CF834799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_WHEAT5.548e-7994.16Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF415_TOBAC9.464e-7996.67Eukaryotic initiation factor 4A-15 OS=Nicotiana ta... [more]
IF4A9_TOBAC1.614e-7896.67Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A_MAIZE2.754e-7894.00Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A7_TOBAC3.596e-7896.00Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]
IF4A3_ARATH1.367e-7794.67Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
IF4A2_RAT4.872e-6779.22Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB4.872e-6779.22Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE4.872e-6779.22Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_MACFA4.872e-6779.22Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834799 ID=CF834799; Name=CF834799; organism=Citrus sinensis; type=EST; length=702bp
CAATGTTGAGACGGTATGAATGGAAGCTTGAAACACTCTGTGATCTTTAT
GAGACTCTGGCCATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAA
GGTCGACTGGCTTACGGACAAGATGCGAAGCCGTGACCATACAGTCTCTG
CCACTCATGGGGACATGGATCAGAACACCCGAGATATCATTATGCGTGAA
TTTCGCTCTGGTTCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCG
TGGTATTGATGTGCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGA
CTCAACCAGAAAACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGA
AGAAAGGGTGTTGCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCT
TTTTGATATTCAAAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAA
ACGTTGCTGACCTTCTTTGAGGAGGTTCTGTTTTTGTAAGTTTGTCGAGG
CAAGAAGGGGTTTCCTGATTTTGCAAGTACTGTTTAATGTGGTGGTTCTT
TTCTCCCCTTTTTTTTTTTTTTTGGGTTCTTCTTCCTTTCCGTCTAGTGT
CTTAAATTAATGTTGTTCTCAAACATATCCGACCATTTAATCATATGGGT
CATGCACATTTGCAAGCTGCACTGTGGTGGGTTTATAATTATTGAAATTT
TT
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