CF834799
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19 Identity = 43/124 (34.68%), Postives = 77/124 (62.10%), Query Frame = 3 Query: 72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 443 +VIFVN + L +R + V++ H +M Q+ R ++ F++G++R+LI TD+ +RG+D+ V LV+N+D+P P++++HR+GR+ R GR G A+ + D + I++ N +E L Sbjct: 256 AVIFVNRTTTAEVLRRTLRKLEFRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMELL 379
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19 Identity = 44/130 (33.85%), Postives = 79/130 (60.77%), Query Frame = 3 Query: 51 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 440 E A ++IF N + D L +R H V++ H + Q+ R+ + FR+ ++R+L+ TD+ +RG+D+ V LV+N+D+P P++Y+HR+GR+ R GRKG ++ V + D ++ I++ +EE Sbjct: 343 EANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLVGQRDVSLVLAIEERVGRQMEE 472
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19 Identity = 45/151 (29.80%), Postives = 80/151 (52.98%), Query Frame = 3 Query: 12 RYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 464 ++ W L + + ++ ++FV + + L + ++ DH + HGDMDQ+ R+ ++ EF+ +L+ TD+ ARG+D+ + VINYD+ + + HRIGR+GR G KGVA +T D D+ + + + + DL Sbjct: 484 KWNWLTRRLVEFTSSGSV---LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDL 631
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19 Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 3 Query: 75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 449 ++FV T++ D L D + + ++ HGD Q R+ + +FRSG S +L+ T + ARG+D+ V VIN+DLP+ E Y+HRIGR+GR G G+A +F + + D+ +E+PS Sbjct: 444 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 568
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19 Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 3 Query: 72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV---VIEELPSN 452 S+IF N + L +R + V++ H +M Q R + F++G++++LI TD+ +RG+D+ V LV+NYD+P ++++HR+GR+ R GRKG AI+ V D + I++ N +IE++ N Sbjct: 256 SIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDISDN 385
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19 Identity = 44/118 (37.29%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425 +++FV T+ V+++++ + ++VS +G +DQ R + FR G + +L+ TD+ +RGID+ ++ VINYD P QP+ ++HR+GR+ R GR G A + V +D L D+Q F N Sbjct: 349 TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLN 466
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19 Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3 Query: 18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 374 E K+ L L E ++++F NT+ + + D +++ H V GD+ QN R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+ G +I+F Sbjct: 238 EDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19 Identity = 48/154 (31.17%), Postives = 86/154 (55.84%), Query Frame = 3 Query: 75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSNVADLL*GGSVFVSLSRQEGVS*FCKYC 533 ++F + VD++ + + + A HG DQ R+ + F++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ ++ E L D++ + +P +A+L +++++ GV C YC Sbjct: 437 LVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKESGVK-GCAYC 589
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19 Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 3 Query: 15 YEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 392 +E K+++L +L+ + Q+++F N + L D + S+ G + Q+ R M + + RVLI+TDL +RGID ++V+LVIN D+P E Y+HRIGR+GRFG GVA+ + +E Sbjct: 260 FEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEE 385
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19 Identity = 42/115 (36.52%), Postives = 74/115 (64.35%), Query Frame = 3 Query: 72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 416 ++IF N + D L +R H V++ H + Q+ R + FR+ ++R+L+ TD+ ARG+D+ V LV+N+D+P P++Y+HR+GR+ R GR+G AI V + D +++ I++ Sbjct: 364 AIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEE 478 The following BLAST results are available for this feature:
BLAST of CF834799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834799 ID=CF834799; Name=CF834799; organism=Citrus sinensis; type=EST; length=702bpback to top |