CF834799

Overview
NameCF834799
Unique NameCF834799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 43/124 (34.68%), Postives = 77/124 (62.10%), Query Frame = 3
Query:   72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 443
            +VIFVN     + L   +R  +  V++ H +M Q+ R   ++ F++G++R+LI TD+ +RG+D+  V LV+N+D+P  P++++HR+GR+ R GR G A+  +   D   +  I++  N  +E L
Sbjct:  256 AVIFVNRTTTAEVLRRTLRKLEFRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMELL 379          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 44/130 (33.85%), Postives = 79/130 (60.77%), Query Frame = 3
Query:   51 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 440
            E  A   ++IF N  +  D L   +R   H V++ H  + Q+ R+  +  FR+ ++R+L+ TD+ +RG+D+  V LV+N+D+P  P++Y+HR+GR+ R GRKG ++  V + D  ++  I++     +EE
Sbjct:  343 EANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLVGQRDVSLVLAIEERVGRQMEE 472          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 45/151 (29.80%), Postives = 80/151 (52.98%), Query Frame = 3
Query:   12 RYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 464
            ++ W    L +   + ++   ++FV  +   + L + ++  DH +   HGDMDQ+ R+ ++ EF+     +L+ TD+ ARG+D+  +  VINYD+    + + HRIGR+GR G KGVA   +T  D     D+ +      + +   + DL
Sbjct:  484 KWNWLTRRLVEFTSSGSV---LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDL 631          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 449
            ++FV T++  D L D +    +  ++ HGD  Q  R+  + +FRSG S +L+ T + ARG+D+  V  VIN+DLP+  E Y+HRIGR+GR G  G+A +F    +  +  D+        +E+PS
Sbjct:  444 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 568          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 3
Query:   72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV---VIEELPSN 452
            S+IF N     + L   +R  +  V++ H +M Q  R   +  F++G++++LI TD+ +RG+D+  V LV+NYD+P   ++++HR+GR+ R GRKG AI+ V   D   +  I++  N    +IE++  N
Sbjct:  256 SIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDISDN 385          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 44/118 (37.29%), Postives = 75/118 (63.56%), Query Frame = 3
Query:   72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425
            +++FV T+  V+++++ +    ++VS  +G +DQ  R   +  FR G + +L+ TD+ +RGID+  ++ VINYD P QP+ ++HR+GR+ R GR G A + V  +D   L D+Q F N
Sbjct:  349 TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLN 466          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 374
            E K+  L  L E     ++++F NT+   + + D +++  H V    GD+ QN R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+ G +I+F
Sbjct:  238 EDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 48/154 (31.17%), Postives = 86/154 (55.84%), Query Frame = 3
Query:   75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSNVADLL*GGSVFVSLSRQEGVS*FCKYC 533
            ++F   +  VD++ + +  +     A HG  DQ  R+  +  F++G   VL+ TD+ ++G+D   +  VINYD+P + ENY+HRIGR+GR G+ G+A  F+ ++  E  L D++       + +P  +A+L        +++++ GV   C YC
Sbjct:  437 LVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKESGVK-GCAYC 589          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 3
Query:   15 YEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 392
            +E K+++L +L+  +   Q+++F N   +   L D + S+        G + Q+ R   M + +    RVLI+TDL +RGID ++V+LVIN D+P   E Y+HRIGR+GRFG  GVA+ +    +E
Sbjct:  260 FEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEE 385          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 42/115 (36.52%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 416
            ++IF N  +  D L   +R   H V++ H  + Q+ R   +  FR+ ++R+L+ TD+ ARG+D+  V LV+N+D+P  P++Y+HR+GR+ R GR+G AI  V + D +++  I++
Sbjct:  364 AIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEE 478          
The following BLAST results are available for this feature:
BLAST of CF834799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_PICST2.896e-1934.68ATP-dependent RNA helicase DBP8 OS=Pichia stipitis... [more]
DBP8_ASPNC2.896e-1933.85ATP-dependent RNA helicase dbp8 OS=Aspergillus nig... [more]
DDX42_CHICK3.783e-1929.80ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]
DDX3L_MOUSE3.783e-1936.80Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
DBP8_DEBHA3.783e-1934.62ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]
DBP10_SCHPO3.783e-1937.29ATP-dependent RNA helicase dbp10 OS=Schizosaccharo... [more]
RHLB_PSEA64.940e-1939.50ATP-dependent RNA helicase rhlB OS=Pseudoalteromon... [more]
RH35A_ORYSJ4.940e-1931.17DEAD-box ATP-dependent RNA helicase 35A OS=Oryza s... [more]
DDX20_DANRE4.940e-1937.30Probable ATP-dependent RNA helicase DDX20 OS=Danio... [more]
DBP8_COCIM4.940e-1936.52ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834799 ID=CF834799; Name=CF834799; organism=Citrus sinensis; type=EST; length=702bp
CAATGTTGAGACGGTATGAATGGAAGCTTGAAACACTCTGTGATCTTTAT
GAGACTCTGGCCATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAA
GGTCGACTGGCTTACGGACAAGATGCGAAGCCGTGACCATACAGTCTCTG
CCACTCATGGGGACATGGATCAGAACACCCGAGATATCATTATGCGTGAA
TTTCGCTCTGGTTCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCG
TGGTATTGATGTGCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGA
CTCAACCAGAAAACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGA
AGAAAGGGTGTTGCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCT
TTTTGATATTCAAAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAA
ACGTTGCTGACCTTCTTTGAGGAGGTTCTGTTTTTGTAAGTTTGTCGAGG
CAAGAAGGGGTTTCCTGATTTTGCAAGTACTGTTTAATGTGGTGGTTCTT
TTCTCCCCTTTTTTTTTTTTTTTGGGTTCTTCTTCCTTTCCGTCTAGTGT
CTTAAATTAATGTTGTTCTCAAACATATCCGACCATTTAATCATATGGGT
CATGCACATTTGCAAGCTGCACTGTGGTGGGTTTATAATTATTGAAATTT
TT
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