CF834799

Overview
NameCF834799
Unique NameCF834799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:981..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 446
            +++FV T+R  D L + + +     ++ HGD  Q  R+  +R F+SG++ +L+ TD+ ARG+D+  V+ VIN+DLP   ++Y+HRIGR+GR G+ G+A  F    +  +   + +      +E+P
Sbjct:  436 TLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVP 560          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADLL*GGSVFVSLSRQEGVS*FCKYC 533
            +IF   +  VD + + +  +     A HG  DQ  R+  +  F++G   VL+ TD+ ++G+D   +  VINYD+P + ENY+HRIGR+GR G+ G+A  F+ ++  E  L D++       + +P  +A+L        +++   GV   C YC
Sbjct:  401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVK-GCAYC 553          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 3
Query:   27 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS--RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 416
            L TL D  +  A  + +IFV  +   D L  K+ +  +   A HG  DQ  R   +REF S +S   +LI T + ARG+DV+ ++LVINY+  +  E+Y+HR+GR+GR GRKG AI FV+    R + D+ K
Sbjct:  562 LSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVK 693          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 3
Query:   75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 401
            ++FV +  +   L  ++      V   H D  Q  RD  +  FR+G   VLI T LLARGID + V+LVINYD PT    Y+HRIGR+GR G KG A+ F T DD+ +L
Sbjct:  414 LVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 522          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 47/137 (34.31%), Postives = 81/137 (59.12%), Query Frame = 3
Query:    9 RRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 419
            +RY++K E L       +   +++FV T+  V+++T  +R   + VS  +G +DQ+ R   + +FR G + VL+ TD+ ARGID+  ++ VIN+ LP   + ++HR+GR+ R G KG A + V   +   L D++ F
Sbjct:  376 KRYKFKKERLPPANRLPSPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELF 512          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N
Sbjct:  241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N
Sbjct:  241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425
            E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KG++I+F   +    L  I+ + N
Sbjct:  241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376          
The following BLAST results are available for this feature:
BLAST of CF834799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH37_ORYSJ1.101e-1834.40DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
RH35_ARATH1.101e-1831.82DEAD-box ATP-dependent RNA helicase 35 OS=Arabidop... [more]
PRP5_DEBHA1.101e-1840.91Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX52_BOVIN1.101e-1844.95Probable ATP-dependent RNA helicase DDX52 OS=Bos t... [more]
DBP10_CANAL1.101e-1834.31ATP-dependent RNA helicase DBP10 OS=Candida albica... [more]
RHLB_SHESW1.437e-1837.50ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_SHEPC1.437e-1837.50ATP-dependent RNA helicase rhlB OS=Shewanella putr... [more]
RHLB_SHEB91.437e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB81.437e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB51.437e-1836.76ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834799 ID=CF834799; Name=CF834799; organism=Citrus sinensis; type=EST; length=702bp
CAATGTTGAGACGGTATGAATGGAAGCTTGAAACACTCTGTGATCTTTAT
GAGACTCTGGCCATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAA
GGTCGACTGGCTTACGGACAAGATGCGAAGCCGTGACCATACAGTCTCTG
CCACTCATGGGGACATGGATCAGAACACCCGAGATATCATTATGCGTGAA
TTTCGCTCTGGTTCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCG
TGGTATTGATGTGCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGA
CTCAACCAGAAAACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGA
AGAAAGGGTGTTGCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCT
TTTTGATATTCAAAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAA
ACGTTGCTGACCTTCTTTGAGGAGGTTCTGTTTTTGTAAGTTTGTCGAGG
CAAGAAGGGGTTTCCTGATTTTGCAAGTACTGTTTAATGTGGTGGTTCTT
TTCTCCCCTTTTTTTTTTTTTTTGGGTTCTTCTTCCTTTCCGTCTAGTGT
CTTAAATTAATGTTGTTCTCAAACATATCCGACCATTTAATCATATGGGT
CATGCACATTTGCAAGCTGCACTGTGGTGGGTTTATAATTATTGAAATTT
TT
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