CF834799
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18 Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 72 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 446 +++FV T+R D L + + + ++ HGD Q R+ +R F+SG++ +L+ TD+ ARG+D+ V+ VIN+DLP ++Y+HRIGR+GR G+ G+A F + + + + +E+P Sbjct: 436 TLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVP 560
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18 Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADLL*GGSVFVSLSRQEGVS*FCKYC 533 +IF + VD + + + + A HG DQ R+ + F++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ ++ E L D++ + +P +A+L +++ GV C YC Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVK-GCAYC 553
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18 Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 3 Query: 27 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS--RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 416 L TL D + A + +IFV + D L K+ + + A HG DQ R +REF S +S +LI T + ARG+DV+ ++LVINY+ + E+Y+HR+GR+GR GRKG AI FV+ R + D+ K Sbjct: 562 LSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVK 693
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18 Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 3 Query: 75 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 401 ++FV + + L ++ V H D Q RD + FR+G VLI T LLARGID + V+LVINYD PT Y+HRIGR+GR G KG A+ F T DD+ +L Sbjct: 414 LVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 522
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18 Identity = 47/137 (34.31%), Postives = 81/137 (59.12%), Query Frame = 3 Query: 9 RRYEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 419 +RY++K E L + +++FV T+ V+++T +R + VS +G +DQ+ R + +FR G + VL+ TD+ ARGID+ ++ VIN+ LP + ++HR+GR+ R G KG A + V + L D++ F Sbjct: 376 KRYKFKKERLPPANRLPSPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELF 512
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYIN 376
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376
BLAST of CF834799 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 18 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 425 E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KG++I+F + L I+ + N Sbjct: 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIESYIN 376 The following BLAST results are available for this feature:
BLAST of CF834799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834799 ID=CF834799; Name=CF834799; organism=Citrus sinensis; type=EST; length=702bpback to top |