CF834810

Overview
NameCF834810
Unique NameCF834810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834810_ssr289 microsatellite CF834810_ssr289:289..300. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573 contig Csv1_Contig12573:597..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.904e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVESPALAPPEVQIDLAAQQ HE EL  AA+  LPD+DD+AFE
Sbjct:  176 NLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
[Close]
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVE+ AL PPEV IDLA QQQHE ELAAAA+QPLPD+DDD  E
Sbjct:  176 NLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVE+ AL PPEV IDLA QQQHE ELAAAA+QPLPD+DDD  E
Sbjct:  176 NLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221
[Close]
BLAST of CF834810 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:  250 NLHFVESPALAPPEVQIDLAAQQQHEDELAAAASQPLPDEDDDAFE 387
            NLHFVE+PALAPPEV ID+A QQ++E EL  AA+QPLPD+DDD FE
Sbjct:  176 NLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
The following BLAST results are available for this feature:
BLAST of CF834810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RANB1_TOBAC1.904e-1480.43GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RAN2_ORYSJ1.234e-1378.26GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI1.234e-1378.26GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN1_ARATH2.749e-1373.91GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834810 ID=CF834810; Name=CF834810; organism=Citrus sinensis; type=EST; length=388bp
ATATGGGGCCCCTTATAGACATCCTAGAGAAAATTGGATGGATCCCCCGC
TGGTAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACA
TGAATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTT
CAATCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCA
ATATTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCAC
TCGAAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGC
AAGTTCATCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTG
GGGGAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTA
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