CF834823

Overview
NameCF834823
Unique NameCF834823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6120 contig Csv1_Contig6120:1068..1701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834823 vs. ExPASy Swiss-Prot
Match: CP4A4_RABIT (Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CYP4A4 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 36/126 (28.57%), Postives = 61/126 (48.41%), Query Frame = 2
Query:   62 EGNKRAQEELNQAVGPNRVMTEADFQNLHYLQCEVKESMRLHPPTPLMLPHKANADVKINGYNVPKGSVVHVNVWAIGKHPADWKNPMEFRPERFLKEDIDMKGHDYRLLPFGSGRRICPGIQLGI 439
            E   R +EE+   +G    +T      + Y    +KE++RL+PP P +    +      +G ++PKG ++ ++++ +  +P  W+NP  F P RF     D   H +  LPF  G R C G Q  +
Sbjct:  342 EHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEALRLYPPVPSVTRQLSKPVTFPDGRSLPKGVILFLSIYGLHYNPKVWQNPEVFDPFRFAP---DSAYHSHAFLPFSGGARNCIGKQFAM 464          
BLAST of CF834823 vs. ExPASy Swiss-Prot
Match: CP4A2_RAT (Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 37/127 (29.13%), Postives = 61/127 (48.03%), Query Frame = 2
Query:   62 EGNKRAQEELNQAVGPNRVMTEADFQNLHYLQCEVKESMRLHPPTPLMLPHKANADVKINGYNVPKGSVVHVNVWAIGKHPADWKNPMEFRPERFLKEDIDMKGHDYRLLPFGSGRRICPGIQLGIN 442
            E  +R +EE+   +G    +T      + Y    +KE++RL+ P P +    ++     +G ++PKG  V + ++ +  +P+ W NP  F P RF     D   H +  LPF  G R C G Q  +N
Sbjct:  336 EHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRF---SPDSPRHSHAYLPFSGGARNCIGKQFAMN 459          
BLAST of CF834823 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 2
Query:   74 RAQEELNQAVGPNRVMTEADFQNLHYLQCEVKESMRLHPPTPLMLPHKANADVKINGYNVPKGSVVHVNVWAIGKHPADWKNPMEFRPERFLKEDIDMKGHDYR---LLPFGSGRRICPGIQL 433
            + Q+E++  +GPN   +  D   + Y +  + E +R     PL + H  + D  + GY++PKG+ V  N++++      W++P  F PERFL    D  G+  +   L+PF  GRR C G  L
Sbjct:  335 QVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFL----DSSGYFAKKEALVPFSLGRRHCLGEHL 453          
BLAST of CF834823 vs. ExPASy Swiss-Prot
Match: C11B2_HUMAN (Cytochrome P450 11B2, mitochondrial OS=Homo sapiens GN=CYP11B2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  107 PNRVMTEADFQNLHYLQCEVKESMRLHPPTPLMLPHKANADVKINGYNVPKGSVVHVNVWAIGKHPADWKNPMEFRPERFLKEDIDMKGHDYRLLPFGSGRRICPGIQLGINLVTSMLGHLLHH 478
            P +  TE     L  L+  +KE++RL+P   L L    ++D+ +  Y++P G++V V ++++G++ A +  P  + P+R+L  DI   G ++  +PFG G R C G +L    +  +L H+L H
Sbjct:  355 PQKATTE-----LPLLRAALKETLRLYP-VGLFLERVVSSDLVLQNYHIPAGTLVQVFLYSLGRNAALFPRPERYNPQRWL--DIRGSGRNFHHVPFGFGMRQCLGRRLAEAEMLLLLHHVLKH 470          
The following BLAST results are available for this feature:
BLAST of CF834823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
CP4A4_RABIT9.139e-1128.57Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CY... [more]
CP4A2_RAT9.139e-1129.13Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2... [more]
CP2R1_HUMAN9.139e-1131.71Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
C11B2_HUMAN9.139e-1131.45Cytochrome P450 11B2, mitochondrial OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834823 ID=CF834823; Name=CF834823; organism=Citrus sinensis; type=EST; length=634bp
GGCATGGACACCTTTTAATAACTGGAGAATGGGCAATGGCAGAGCTCGGC
CCCAACCCATAGAGGGCAACAAAAGAGCTCAGGAAGAACTAAACCAAGCA
GTAGGCCCTAATCGCGTCATGACAGAAGCAGACTTTCAAAACCTGCACTA
TCTCCAGTGCGAGGTCAAAGAATCAATGCGGCTACACCCACCAACGCCTC
TAATGCTGCCCCACAAAGCCAACGCCGATGTAAAAATCAACGGCTACAAC
GTCCCGAAAGGATCAGTCGTACATGTAAACGTTTGGGCCATAGGCAAACA
CCCTGCTGATTGGAAAAACCCGATGGAATTTAGGCCTGAGAGGTTCTTAA
AGGAGGACATTGACATGAAAGGACACGATTATCGATTGTTACCATTTGGT
TCGGGGAGAAGAATTTGTCCCGGCATACAACTTGGCATAAATTTAGTGAC
CTCCATGTTGGGTCATCTTTTGCACCATTTGTGGAGGGCACCGGCTAAAG
GAGTGAAGCCTGAGGAAATTGATATGGCCGGGAACCCTGGACAGGTCACG
TACATGACCACACCCCTTGAGGTTGTGGCTACCCCGCGGTTGGCTGATCA
TGGCCTGTACAAGCGTGACCTTGTGGACATGTGA
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