CF834827

Overview
NameCF834827
Unique NameCF834827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_ACACA (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Acanthamoeba castellanii GN=NAD11 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.454e-42
Identity = 84/131 (64.12%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  221 VDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            V+ +   I    T++QAC    VDI RFC+H +LSIAGNCRMCLVE  K  KP+ASCA+     M I T+T   KKARE V+EFLL NHPLDCPICDQGGECDLQDQS+ FGSDRGRF E KRSV DK+ G
Sbjct:    8 VNDFQYTINNKLTLIQACLKNKVDISRFCFHEKLSIAGNCRMCLVEDLKQVKPLASCAINVSNSMNIYTNTLKVKKARESVLEFLLANHPLDCPICDQGGECDLQDQSVVFGSDRGRFYEFKRSVEDKDCG 138          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_STRCO (NADH-quinone oxidoreductase subunit G OS=Streptomyces coelicolor GN=nuoG PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.283e-37
Identity = 73/146 (50.00%), Postives = 98/146 (67.12%), Query Frame = 2
Query:  161 SPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTD--TPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 592
            +P GG     P PED + + +DG  + +PKG  V++A E  G++IPRFC H  L  AG CR C+VEVE   KP+ASC +    GM +KT   +P+A+KA+ GVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G    RF   KR+
Sbjct:    7 TPSGGGAAAVP-PEDLVTLTIDGAEISVPKGTLVIRAAEQLGIEIPRFCDHPLLDPAGACRQCIVEVEGQRKPMASCTITCTDGMVVKTQLTSPVAEKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSHGQSDSRFEGKKRT 151          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_DICDI (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium discoideum GN=nad11 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 2
Query:  257 TVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA---LPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            T+LQAC   G++IPRFCYH +L+IAGNCRMCLV V    K +A+C +P         I+T+     KAREGVMEFLL+NHPLDCPICDQGGECDLQ+Q++A+G D GRF   KR+V  K  G
Sbjct:   22 TILQACTANGIEIPRFCYHEKLTIAGNCRMCLVYVTNEEKLLAACGIPLDENFDDESIETEIDEILKAREGVMEFLLINHPLDCPICDQGGECDLQEQTLAYGLDTGRFYIKKRAVEIKTFG 143          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_DICCI (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium citrinum GN=nad11 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.628e-36
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 2
Query:  257 TVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA---LPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            T+LQAC   G++IPRFCYH +L+IAGNCRMCLV V    K +A+C +P         I+T+     KAREGVMEFLL+NHPLDCPICDQGGECDLQ+Q++A+G D GRF   KR+V  K  G
Sbjct:   22 TILQACTANGIEIPRFCYHEKLTIAGNCRMCLVYVTNEEKLLAACGIPLDENFDDESIETEIDEILKAREGVMEFLLINHPLDCPICDQGGECDLQEQTIAYGLDTGRFYIKKRAVEVKAFG 143          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_MYCTU (NADH-quinone oxidoreductase subunit G OS=Mycobacterium tuberculosis GN=nuoG PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 2
Query:  203 DAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTD--TPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 592
            + + + +DG  + +PKG  V++A E+ G+ IPRFC H  L   G CR CLVEVE   KP+ASC   A   M ++T   + +A KA+ GVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G    RFTE KR+
Sbjct:   15 EMVTLTIDGVEISVPKGTLVIRAAELMGIQIPRFCDHPLLEPVGACRQCLVEVEGQRKPLASCTTVATDDMVVRTQLTSEIADKAQHGVMELLLINHPLDCPMCDKGGECPLQNQAMSNGRTDSRFTEAKRT 146          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_MYCBO (NADH-quinone oxidoreductase subunit G OS=Mycobacterium bovis GN=nuoG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 2
Query:  203 DAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTD--TPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 592
            + + + +DG  + +PKG  V++A E+ G+ IPRFC H  L   G CR CLVEVE   KP+ASC   A   M ++T   + +A KA+ GVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G    RFTE KR+
Sbjct:   15 EMVTLTIDGVEISVPKGTLVIRAAELMGIQIPRFCDHPLLEPVGACRQCLVEVEGQRKPLASCTTVATDDMVVRTQLTSEIADKAQHGVMELLLINHPLDCPMCDKGGECPLQNQAMSNGRTDSRFTEAKRT 146          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG2_RHIME (NADH-quinone oxidoreductase subunit G 2 OS=Rhizobium meliloti GN=nuoG2 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.332e-31
Identity = 63/134 (47.01%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNL 610
            I+V +D   L++  G TVL A E  G++IP FCY  RL    +CRMCLVE+E   +   +CA  A  GM ++T+TPL ++ R  +++ LL NHPLDCPICD+GGEC+LQD  MA+G    RF + KR    K++
Sbjct:    2 IKVTIDEQSLEVEAGSTVLAAAERLGIEIPTFCYWKRLPPLASCRMCLVEIEGLRRLQPACATVAADGMVVRTNTPLIEETRSSMLDMLLANHPLDCPICDKGGECELQDMVMAYGPGESRFRDPKRVFHSKDI 135          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_PSEFL (NADH-quinone oxidoreductase subunit G OS=Pseudomonas fluorescens GN=nuoG PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.545e-23
Identity = 56/138 (40.58%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  215 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            + VDG  L++     +LQAC   G+DIP FC+H  L   G CR C V     E +K  + V SC  PA  G  I  D   AK  R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  +++LG
Sbjct:    4 IHVDGKELEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDKRGRIVMSCMTPATDGSWISIDDEEAKVFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQDLG 141          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_BUCBP (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.545e-23
Identity = 52/138 (37.68%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  215 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV-----EKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +FVD     + K   +LQAC  +G++IP FC+H  L   G+CR C V +     +K  + V SC    L GM + T   +++  R+G++E L++NHP DCPIC++GG C LQD ++  G    R+   KR+  ++ LG
Sbjct:    4 IFVDNEEYNVDKSDNLLQACLSSGINIPYFCWHPVLGSIGSCRQCAVTIYKDLEDKVGQLVMSCMTSVLDGMIVSTSDKISRNFRKGIIELLMLNHPHDCPICEEGGSCHLQDMTVMAGHTVRRYRFTKRTHKNQYLG 141          
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NUOG_PSEAE (NADH-quinone oxidoreductase subunit G OS=Pseudomonas aeruginosa GN=nuoG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  215 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            + VDG  L++     +LQAC   G+DIP FC+H  L   G CR C V     E +K  + V SC  PA     I  +   AK+ R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  ++ LG
Sbjct:    4 IHVDGKTLEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDKRGRLVMSCMTPATDNTWISIEDEEAKQFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELG 141          
The following BLAST results are available for this feature:
BLAST of CF834827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NDUS1_ACACA5.454e-4264.12NADH-ubiquinone oxidoreductase 75 kDa subunit OS=A... [more]
NUOG_STRCO5.283e-3750.00NADH-quinone oxidoreductase subunit G OS=Streptomy... [more]
NDUS1_DICDI3.424e-3659.02NADH-ubiquinone oxidoreductase 75 kDa subunit OS=D... [more]
NDUS1_DICCI7.628e-3659.02NADH-ubiquinone oxidoreductase 75 kDa subunit OS=D... [more]
NUOG_MYCTU7.894e-3350.00NADH-quinone oxidoreductase subunit G OS=Mycobacte... [more]
NUOG_MYCBO7.894e-3350.00NADH-quinone oxidoreductase subunit G OS=Mycobacte... [more]
NUOG2_RHIME4.332e-3147.01NADH-quinone oxidoreductase subunit G 2 OS=Rhizobi... [more]
NUOG_PSEFL2.545e-2340.58NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_BUCBP2.545e-2337.68NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_PSEAE2.155e-2239.13NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834827 ID=CF834827; Name=CF834827; organism=Citrus sinensis; type=EST; length=614bp
AATGGGGTTAGGGTTGTTAGCATCGAGGGCGATGAGACCCCATAAGAATT
CAAACTCCAGAGTNTTTATCCGGTCCATCGCCTTCAAACCGGAGCTCCAA
TCACCCGAAGCTTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCT
CCCCCCTCGATCGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCTG
AAGATGCAATCGAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAG
GGCTTCACCGTTTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAG
ATTTTGTTATCACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTC
TCGTTGAAGTCGAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCT
GCTCTTCCCGGAATGAAAATTAAGACGGATACACCGTTAGCTAAGAAGGC
GAGAGAAGGGGTGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTC
CAATTTGTGATCAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCT
TTCGGTTCTGATCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGA
TAAGAATCTTGGTC
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