CF834828

Overview
NameCF834828
Unique NameCF834828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_RAT (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  249 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDE-------RAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 617
            VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+       +  + L   +  E  ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  582 VILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLGEVSPNLVRYDDVEEANYFQQASELAKLVDQEFLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_NEUCR (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-78 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -1
Query:  243 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPATLGPSLKPEIKSE-----MDLTPFGSAVENFYMTDSITRASKTMAQCSA 617
            ++LP +A++EK GTY NTEG  Q T  A    G AR DWKI+RA+SE  G+RLPYD +  +R R+  ++P L   D   P +L    K ++  +         P    +ENFY TD+I+R+S TMA+CSA
Sbjct:  586 IVLPGAAYTEKAGTYVNTEGRVQMTRAATGLPGAARTDWKILRAVSEYLGVRLPYDDVAQLRDRMVEISPALSSYDIIEPPSLQQLSKVQLVEQNQGATATNEPLKKVIENFYFTDAISRSSPTMARCSA 715          
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_DROME (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Drosophila melanogaster GN=ND75 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  228 ILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPA----TLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK 614
            +LP +A++EK+G Y NTEG  QQTLP V   G AR+DWKI+RALSEV G  LPYD +  +R+R+  VAP+L  + +  PA      G   K      +D+      + +++MTD+I+RAS TMA+C + + K+
Sbjct:  589 VLPGAAYTEKQGIYVNTEGRPQQTLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRNRLEDVAPHLTRLGQLEPAGDAGAAGTISKSIGGGAIDIKL--KELRDYFMTDAISRASPTMAKCISAVNKQ 719          
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NDUS1_RECAM (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = -1
Query:  240 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVD--ERAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAM 617
            VILP SA++EK  TY N EG  Q T  A    G+AR+DWKIIRALSEV   +LPYD+   I +R  ++AP+LL V+  E+    +  SL    K  +    F     NFY+T++I R+S+TMA+CS++
Sbjct:  562 VILPGSAYTEKTATYVNVEGRVQNTKSAFYAPGNAREDWKIIRALSEVLNKKLPYDSFEDIHTRFMSIAPHLLKVNAIEKNKIVIENSL--PFKGLIKNIGFKPLFNNFYLTNAICRSSQTMAKCSSI 687          
BLAST of CF834828 vs. ExPASy Swiss-Prot
Match: NQO3_PARDE (NADH-quinone oxidoreductase chain 3 OS=Paracoccus denitrificans GN=nqo3 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 40/126 (31.75%), Postives = 71/126 (56.35%), Query Frame = -1
Query:  240 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDERAPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAM 617
            +ILP + ++E+ G + NTEG  Q  + A    G+ +++W I+RALS   G   P+D++ G+R ++    P+L  +D+  P       +P  + ++    F  A+ +FY+T+ I R+S  M + SAM
Sbjct:  539 IILPGACYTEESGLFVNTEGRPQLAMRANFAPGEGKENWAILRALSAELGATQPWDSLAGLRRKLVEAVPHLAQIDQ-VPQN---EWQPLGRFDLGQASFRYAIRDFYLTNPIARSSPLMGELSAM 660          
The following BLAST results are available for this feature:
BLAST of CF834828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
NDUS1_RAT1.612e-2548.46NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_NEUCR9.777e-2343.08NADH-ubiquinone oxidoreductase 78 kDa subunit, mit... [more]
NDUS1_DROME1.277e-2243.61NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RECAM2.408e-2145.31NADH-ubiquinone oxidoreductase 75 kDa subunit OS=R... [more]
NQO3_PARDE1.084e-1331.75NADH-quinone oxidoreductase chain 3 OS=Paracoccus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834828 ID=CF834828; Name=CF834828; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTCCCTTTAAAATCATTNGGGTTTATAAAGCAAACAGCGCTTTC
CCTTTGTAGATCATTTTACAAGGAAACAAACAATGCCTAATTTCCTTTAT
TGGAAAATACTTCCATTGTTTCACAAGATTGGCAAATAAACAGCTTCAAT
AAGATAATCTTACGGCAGCCAAAAAAAAGATAAAATTTGACACAATTATT
TGAGTAATCCGCAAAGCCAATCACTCACTTCTTCAACAGCATTGCACTGC
ATTGGGCCATGGTCTTTGATGCTCTGGTAATAGAATCAGTCATATAAAAA
TTCTCAACTGCACTACCGAAAGGAGTCAAATCCATCTCACTTTTGATCTC
GGGCTTCAAAGAAGGCCCAAGAGTAGCAGGGGCTCTCTCATCCACATGCA
AGAGATTTGGTGCCACTGTCCTGATCCGGGATCGAATGCCTCCAATTGTA
TCATAAGGTAAACGCATCCCTGCCACCTCAGAAAGTGCCCGAATTATCTT
CCAATCATCTCTGGCATCACCAACAGTTGGAACTGCAGGCAACGTCTGTT
GAGTGCAACCTTCAGTATTTTCGTAAGTCCCTTCCTTCTCGCTAAAAGCT
GATGCTGGGAGAATTAC
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