CF834833

Overview
NameCF834833
Unique NameCF834833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11237 contig Csv1_Contig11237:309..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = -2 
Query:  248 LDLGNSNISGTWGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTL 520
            LDL   ++ GT  PE+ QL  L+ L L  N  SG IPKE G+ ++L  +D+ +N L G+IP   +N  SLK L L+ NK +  +  ++  L
Sbjct:   75 LDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLSGQIPPELSNGLSLKHLLLSGNKFSDDMRIKIVRL 165
[Close]
BLAST of CF834833 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = -2 
Query:  194 LDLGNSNISGTWGPEV--GQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 520
            L+LG + +    GPEV      +L  + L  N    KIP+++  L  L S+D+  NK  G IP+   +L SL+ L L  N L+GS+P      S L++ DVS N L G +P
Sbjct:  184 LNLGGNKL----GPEVVPSLASNLITISLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLP 290
The following BLAST results are available for this feature:
BLAST of CF834833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
MRH1_ARATH7.074e-1139.56Probable LRR receptor-like serine/threonine-protei... [more]
Y1143_ARATH9.239e-1136.94Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834833 ID=CF834833; Name=CF834833; organism=Citrus sinensis; type=EST; length=560bp
TCGATAAGCTGATGCACACAATATAATTTTACCCTATACGAGTCTTTAAC
ATTATGGTCCTCAATAGAAGACGGAGGGTTTTCAACCTTCTTCAGCATCC
AAAATCATAAGGCACCAGTCCTTGCAGCTCTGGTCCATTGAGTTTATTAT
TTTCAAAACTCTCCATAGGAAAGCTTCTAAAAGGACCATCAACAGGGATT
GTCCCACAGAGACCATTGTTAGAAACATCAAAAACTTTGAGGTCCGACAG
GGTGGTCAGCTCCCTCGGAATTGATCCTGTTAGTTTGTTGTTGTTCAACC
GCAGAAATTTAAGTGACTTCAAATTGGCAAAGGACTTTGGTATTTCTCCT
TCCAGTTTATTCTGATACATATCCATGCTGACAAGGCTTTTCAAATTACC
TAACTCTTTCGGAATTTTCCCACTTATGTCATTCATGTAAAGCTCCAAGT
ACTGCAGATGCTGGAGCTGGCCAACCTCAGGCCCCCAAGTTCCAGAAATA
TTAGAGTTACCCAAGTCCAAACGAATCACATGATTGTTGGAATCACAGGG
GACATGGAAC
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