CF834839

Overview
NameCF834839
Unique NameCF834839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = -2
Query:  351 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 737
            YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:   33 YGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = -2
Query:  351 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 737
            YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:   33 YGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:   30 YGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGLR K+E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +   SP
Sbjct:   33 YGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGLR KRELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG + E+ +  D VLAL VE  L+RRLQTLV + G A+S   AR  I   HI +  + V IP +  RV+  +  E S   P
Sbjct:   33 YGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = -2
Query:  345 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 737
            +GLR KRELW+    LSR+RN AR LL L ++   R  +   LLR + R G + +  + LD VL L V + L RRLQT+V K     + + AR  +   HI +  ++V IPS+ V V+ +  I+ +  S F
Sbjct:   33 FGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGLR KRELW+    L R R  AR LL    ++        E + LL ++ R+  L+   N +D VL L  E  LERRLQT V + G+A++   AR  I   HI +  + V +P  +V  + + ++E+  TSP
Sbjct:   33 YGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ PS+ V V  +  IEF  TSP
Sbjct:   32 YGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGLR K+E+W+    L   R+ AR LL          E       + E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +  +SP
Sbjct:   33 YGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:   33 YGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
The following BLAST results are available for this feature:
BLAST of CF834839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_HALSA4.705e-1538.7630S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS34.705e-1538.7630S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_NANEQ1.048e-1438.4630S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_METAC1.048e-1435.2930S ribosomal protein S4P OS=Methanosarcina acetiv... [more]
RS4_METMJ1.788e-1439.1030S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_CENSY1.788e-1438.9330S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS4_METBU2.335e-1436.8430S ribosomal protein S4P OS=Methanococcoides burt... [more]
RS4_NATPD3.050e-1438.1730S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS4_METMA3.050e-1434.3130S ribosomal protein S4P OS=Methanosarcina mazei ... [more]
RS4_METS31.513e-1337.6930S ribosomal protein S4P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834839 ID=CF834839; Name=CF834839; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTTTTTTTTTACCGGAGATTTAATTTAGGCATAAAAAAGCCTAT
GGATCAAAGAGTACATCCCAAAAAACAAAAACAATTCCCTCAATGAGTAG
TCTGTAAAGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAG
CAAAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCA
GAGTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTT
ATTCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCA
GCCTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGG
ACTTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAA
ATGAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTG
ATGAGCACTCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACAC
AAGGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACA
CATAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATC
CTCCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATC
GAGAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATT
GAACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATAC
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