CF834839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13 Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = -2 Query: 363 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 737 YGL+ K+E+W+ + + R R AR +L +D R + + LL + R GF+ + KL+ VL L VE+ L RRLQ+LVFK G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 33 YGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13 Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = -2 Query: 348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737 YGL+ K ELWR Q L R AR L+ + + + E GE L R+ RYG L + + + VL L V + LERRLQT+V++ G+A + AR I HI V V PS +V I F SP Sbjct: 32 YGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGILS-ADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13 Identity = 50/125 (40.00%), Postives = 65/125 (52.00%), Query Frame = -2 Query: 363 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 737 YGL+ K ELWR Q L R AR LL ++ E E L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A + AR I HI + V P V + + F Sbjct: 32 YGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12 Identity = 42/135 (31.11%), Postives = 76/135 (56.30%), Query Frame = -2 Query: 348 YGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737 YGLR K+ +W+ L + R+ AR LL + ++ I + + +++++ G L+E KL+ VLAL V++ +ERRLQT++++ G A SI AR I HI + + + +P ++V + + + + SP Sbjct: 33 YGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166 The following BLAST results are available for this feature:
BLAST of CF834839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834839 ID=CF834839; Name=CF834839; organism=Citrus sinensis; type=EST; length=738bpback to top |