CF834839

Overview
NameCF834839
Unique NameCF834839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:167..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  363 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 737
            YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   AR+ +   HI +  + +N P  +V    +++I+F
Sbjct:   33 YGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGL+ K ELWR Q  L   R  AR L+  + +    + E  GE  L R+ RYG L  + + +  VL L V + LERRLQT+V++ G+A +   AR  I   HI V    V  PS +V       I F   SP
Sbjct:   32 YGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGILS-ADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 50/125 (40.00%), Postives = 65/125 (52.00%), Query Frame = -2
Query:  363 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 737
            YGL+ K ELWR Q  L   R  AR LL    ++     E E  L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A +   AR  I   HI +    V  P   V    +  + F
Sbjct:   32 YGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152          
BLAST of CF834839 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 42/135 (31.11%), Postives = 76/135 (56.30%), Query Frame = -2
Query:  348 YGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 737
            YGLR K+ +W+    L + R+ AR LL +       ++   I + + +++++   G L+E   KL+ VLAL V++ +ERRLQT++++ G A SI  AR  I   HI +  + + +P ++V    +  + + + SP
Sbjct:   33 YGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166          
The following BLAST results are available for this feature:
BLAST of CF834839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METST1.977e-1335.2030S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_HALWD2.582e-1338.6430S ribosomal protein S4P OS=Haloquadratum walsbyi... [more]
RS4_HALMA3.372e-1340.0030S ribosomal protein S4P OS=Haloarcula marismortu... [more]
RS4_UNCMA1.281e-1231.1130S ribosomal protein S4P OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834839 ID=CF834839; Name=CF834839; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTTTTTTTTTACCGGAGATTTAATTTAGGCATAAAAAAGCCTAT
GGATCAAAGAGTACATCCCAAAAAACAAAAACAATTCCCTCAATGAGTAG
TCTGTAAAGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAG
CAAAAACATAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCA
GAGTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTT
ATTCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCA
GCCTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGG
ACTTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAA
ATGAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTG
ATGAGCACTCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACAC
AAGGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACA
CATAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATC
CTCCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATC
GAGAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGCGTATT
GAACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATAC
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