CF834840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 73/165 (44.24%), Postives = 102/165 (61.82%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 557 K PR P+EK RL E +LVG YGL+ K ELW ++ ++ + AR LLT NP I G +LLRR+ +YG L +E N L+ VL LT+ ++LERRLQ VF +G+AKS+HHAR+LI R I + Q+V++P F+VR D + IE++ S +G Sbjct: 8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 69/157 (43.95%), Postives = 102/157 (64.97%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 554 K ++ PR P+ K L EL+L+G YGLR KRELWR Q + + R+ AR LL P+ I E +ALL R++R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI HI + + + P ++V + + ++++ TSPF Sbjct: 9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27 Identity = 64/156 (41.03%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 551 K ++ PR P+E RL+ E +L+ +YGLR K+ELWR Q L R R A++L+ + +R E EAL R+++ G L++ + LD +L LTVE+ LERRLQT+V++ G+AK+ AR L+ RHI +G ++V +PS++V + ++ +++S SP Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26 Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 566 K + P+ P+ K RL EL LVG YGLR KRELW+++ R+ AR LL L + + E +ALL R++ G L E+ LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI HI + + + P ++V+ D + ++++ TSP+ R Sbjct: 9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26 Identity = 66/169 (39.05%), Postives = 99/169 (58.58%), Query Frame = 3 Query: 78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 581 R + KT++ P P+ K R++ E L +YGLR KRE+W+ + L + R AR L++ ++ + E L + +YG L+ LD VL+LTVE+ LERRLQTLVF+ G+A++ AR LI HI V ++V PS++V V+ + I ++ SPF P R K Sbjct: 6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 3 Query: 78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 575 R K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L E+N R + L+++++R G LE+ + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI HI + + V P +VV + I++ TSPF P + Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 554 K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q L + R AAR+LL L + +FE + L+ M R G L + +D VLAL V LERRLQTLV++ G+A+S AR L+ HI +G + V +P ++V + I ++ SPF Sbjct: 9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 551 K + PR P+EK R+D E ++V +YGL+ K+E+WR + LS IR+ ARDL L ++ N ++ + E +++R++RY L E+ LD VL+LTVEN L+RRLQT+VF+ +A S+ AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 63/168 (37.50%), Postives = 98/168 (58.33%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 593 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R + L+++++R G +E+ LD +L L EN+LERRLQT+V+K G+A++I+ AR LI HI +G + V P ++V + I+F TSPF P + N+ Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25 Identity = 66/156 (42.31%), Postives = 96/156 (61.54%), Query Frame = 3 Query: 90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 554 K + PR P+EK R+DAE +L+ +YGL+ KRELWR Q L+ R AR L L +P I + + L+ ++ R L E+ LD VL+L +E+ LERRL+TLV+K +A ++ AR I HI+V ++V IPSF+V + I ++ TSPF Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163 The following BLAST results are available for this feature:
BLAST of CF834840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834840 ID=CF834840; Name=CF834840; organism=Citrus sinensis; type=EST; length=684bpback to top |