CF834840

Overview
NameCF834840
Unique NameCF834840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 554
            K ++ P+ P+ K RL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 3
Query:  417 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 590
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 551
            K ++ P+RP+E +R++ E RLV EYGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G A+S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 569
            K ++ P  P+ K R+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 58/164 (35.37%), Postives = 96/164 (58.54%), Query Frame = 3
Query:   78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 569
            R   + ++ P  P+    L +E +++G+YGLR K+E+W  +  ++  R+ AR LL L      R    + LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:    5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 66/170 (38.82%), Postives = 98/170 (57.65%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 590
            K ++ P+RP+EK R++ E R+V EYGLR KRE+WR Q  L R R AAR+LL          +   + E LL  ++R G L    +  D VL+L ++  LERRLQT+V++ G+A+S   AR ++   HI +  + V+IPS+ V  D +  I +  TSP        ++R N
Sbjct:    9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 3
Query:   78 RNYGKTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 533
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 551
            K+F+ PR P+++AR+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 551
            K +  PR P+EK R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY  L +    LD VL+LTVEN L+RRLQT+VFK  +A S   AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162          
BLAST of CF834840 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   90 KTFKKPRRPYEKARLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 569
            K ++ P  P+ K R+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
The following BLAST results are available for this feature:
BLAST of CF834840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_AERPE8.265e-2437.4230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS9_TOBAC1.079e-2386.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS4_METHJ1.410e-2340.1330S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_SULSO1.841e-2336.8830S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_METS51.841e-2335.3730S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_METPE1.841e-2338.8230S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_KORCO1.841e-2338.1630S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_METBF2.405e-2337.5030S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_THEVO5.357e-2340.7630S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]
RS4_SULIY5.357e-2336.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834840 ID=CF834840; Name=CF834840; organism=Citrus sinensis; type=EST; length=684bp
CTTTTACAAGCTCTCACAGGGGGAGAGAGTGAGGGTAGCACCAGCGGCGC
CCCTAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAA
GAAGCCAAGACGTCCCTATGAGAAGGCCCGATTGGATGCTGAGTTGAGAC
TTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAA
TACGCACTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGA
TGAGAAGAACCCACGACGTATTTTTGAGGGTGAGGCCCTTCTCAGGAGGA
TGCACAGGTATGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTG
TTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGT
GTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCA
GGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTT
GTAGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCC
ATTTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCTG
CTGCCAAGAAGGCCGCAGGTGGAGATGGAGATGAAGAGGATGAACAATAA
ATTACCTTGTGTGAGCAGATAGTTTTTTTATGGT
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