CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7607 contig Csv1_Contig7607:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AIR2_CAEBR (Aurora/Ipl1-related protein kinase 2 OS=Caenorhabditis briggsae GN=air-2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL 244
            +W+ GV+ Y    G  PF+ EN  + +  IK G +T P  +  GARDLI ++L+VDP +R ++ E++ H W  + L
Sbjct:  206 LWAIGVLCYEFLVGKPPFEHENQADTYSAIKAGRFTYPDFVKKGARDLIGKLLVVDPRRRCSLQEVKDHYWVTSML 281
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: TRIB2_PONAB (Tribbles homolog 2 OS=Pongo abelii GN=TRIB2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            VWS GV+LY +  G  PF D    +LF KI+ G + +P  LSP A+ LI  +L  +P +R+T  EI  HPWF
Sbjct:  237 VWSLGVMLYTMLVGRYPFHDIEPSSLFSKIRRGQFNIPETLSPKAKCLIRSILRREPSERLTSQEILDHPWF 308
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: TRIB2_MOUSE (Tribbles homolog 2 OS=Mus musculus GN=Trib2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            VWS GV+LY +  G  PF D    +LF KI+ G + +P  LSP A+ LI  +L  +P +R+T  EI  HPWF
Sbjct:  237 VWSLGVMLYTMLVGRYPFHDIEPSSLFSKIRRGQFNIPETLSPKAKCLIRSILRREPSERLTSQEILDHPWF 308
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: TRIB2_CANFA (Tribbles homolog 2 OS=Canis familiaris GN=TRIB2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            VWS GV+LY +  G  PF D    +LF KI+ G + +P  LSP A+ LI  +L  +P +R+T  EI  HPWF
Sbjct:  237 VWSLGVMLYTMLVGRYPFHDIEPSSLFSKIRRGQFNIPETLSPKAKCLIRSILRREPSERLTSQEILDHPWF 308
[Close]
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: TRIB2_BOVIN (Tribbles homolog 2 OS=Bos taurus GN=TRIB2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWF 232
            VWS GV+LY +  G  PF D    +LF KI+ G + +P  LSP A+ LI  +L  +P +R+T  EI  HPWF
Sbjct:  237 VWSLGVMLYTMLVGRYPFHDIEPSSLFSKIRRGQFNIPETLSPKAKCLIRSILRREPSERLTSQEILDHPWF 308
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
AIR2_CAEBR6.655e-1138.16Aurora/Ipl1-related protein kinase 2 OS=Caenorhabd... [more]
TRIB2_PONAB8.691e-1145.83Tribbles homolog 2 OS=Pongo abelii GN=TRIB2 PE=2 S... [more]
TRIB2_MOUSE8.691e-1145.83Tribbles homolog 2 OS=Mus musculus GN=Trib2 PE=1 S... [more]
TRIB2_CANFA8.691e-1145.83Tribbles homolog 2 OS=Canis familiaris GN=TRIB2 PE... [more]
TRIB2_BOVIN8.691e-1145.83Tribbles homolog 2 OS=Bos taurus GN=TRIB2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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