CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7607 contig Csv1_Contig7607:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: Y7165_DICDI (Probable serine/threonine-protein kinase DDB_G0277165 OS=Dictyostelium discoideum GN=DDB_G0277165 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 59/145 (40.69%), Postives = 87/145 (60.00%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPP-----PDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFRVSS 436
            VWSCGVILYAL  G LPFDDENI  L  K+K G +++P ++   A+DL+ +ML VDP KRI+I EI++HPWF ++  ++    P      + +    +IDE+I + ++ +G      V+      Q  AT+ YY LL+ R +  S
Sbjct:  191 VWSCGVILYALLTGKLPFDDENIRRLLNKVKNGAFSMPPYIHKDAQDLLTKMLTVDPSKRISIKEIKEHPWFVSNFNQFQKATPVEEINAEPLVDYSQIDEDIFRSLMALGVGTIDEVKQQLVSNQKSATLIYYRLLEERKKFDS 335          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: AAPK1_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Caenorhabditis elegans GN=aak-1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 80/244 (32.79%), Postives = 122/244 (50.00%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNE-----ATVAYYLLLDNRFRVSSGYLGA-----EFQETMESGFNRLHPIEPAVSPVAHRAPGFMDYQGMGLRGQLPYERK--WALGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCR 712
            +WSCGVILYA+ CGTLPFDD+N+P LF KIK G YT+P  +   A DLI  ML VDP+KR  +  I  H WF+  LP YL    P+   ++  +D ++++ V +  FD  +  E +   L  E       +AY L ++++         A     E  +TM+ G   L       + V  +           L G    ++K  W LG+++   P E M  V  +L+ +++ WK +  Y++  R
Sbjct:  205 LWSCGVILYAMLCGTLPFDDQNVPTLFAKIKSGRYTVPYSMEKQAADLISTMLQVDPVKRADVKRIVNHSWFRIDLPYYLF---PECENESSIVDIDVVQSVAEK-FDVKE--EDVTGALLAEDHHHFLCIAYRLEVNHKRNADESSQKAMEDFWEIGKTMKMGSTSLPVGATTKTNVGRKI----------LEGLKKEQKKLTWNLGIRACLDPVETMKHVFLSLKSVDMEWKVLSMYHIIVR 432          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK1_RAT (Serine/threonine-protein kinase SIK1 OS=Rattus norvegicus GN=Sik1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 2
Query:   11 LYVWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQ----QAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            L +WS GV+LY L CG+LPFD  N+P L +++  G + +P  +S     LI RML+VDP KRITI +IRQH W QA         P  +MQ         +E++L  +  +G D+ + VESL+N   N     YYLLL+
Sbjct:  205 LDIWSLGVVLYVLVCGSLPFDGPNLPTLRQRVLEGRFRIPFFMSQDCETLIRRMLVVDPAKRITIAQIRQHRWMQADPTLLQQDDPAFSMQGYTSNLGDYNEQVLGIMQALGIDRQRTVESLQNSSYNHFAAIYYLLLE 343          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK1_MOUSE (Serine/threonine-protein kinase SIK1 OS=Mus musculus GN=Sik1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 2
Query:   11 LYVWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQ----QAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            L VWS GV+LY L CG+LPFD  N+P L +++  G + +P  +S     LI RML+VDP KRITI +IRQH W QA         P   MQ         +E++L  +  +G D+ + +ESL+N   N     YYLLL+
Sbjct:  205 LDVWSLGVVLYVLVCGSLPFDGPNLPTLRQRVLEGRFRIPFFMSQDCETLIRRMLVVDPAKRITIAQIRQHRWMQADPTLLQQDDPAFDMQGYTSNLGDYNEQVLGIMQALGIDRQRTIESLQNSSYNHFAAIYYLLLE 343          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK2_CHICK (Serine/threonine-protein kinase SIK2 OS=Gallus gallus GN=SIK2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   11 LYVWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA----HLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFRVSSGYLGA 451
            L +WS GV+LY L CG+LPFD  N+P L +++  G + +P  +S     LI RML+VDP KRITI +I+QH W QA       + L+    +        +E++L  +  +G D+ + VESL+N   N     YYLLL+      S  L +
Sbjct:  204 LDIWSLGVVLYVLVCGSLPFDGPNLPTLRQRVLEGRFRIPYFMSEDCETLIRRMLVVDPTKRITISQIKQHKWMQADPSLRQQQSLSFSMQNYNSNLGDYNEQVLGIMQTLGIDRQRTVESLQNSSYNHFAAIYYLLLERLKEYRSSQLSS 354          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK1_HUMAN (Serine/threonine-protein kinase SIK1 OS=Homo sapiens GN=SIK1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   11 LYVWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL----PRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            L +WS GV+LY L CG+LPFD  N+P L +++  G + +P  +S     LI RML+VDP +RITI +IRQH W +A      P   A             DE+ L  +  +G D+ + VESL+N   N     YYLLL+
Sbjct:  205 LDIWSLGVVLYVLVCGSLPFDGPNLPTLRQRVLEGRFRIPFFMSQDCESLIRRMLVVDPARRITIAQIRQHRWMRAEPCLPGPACPAFSAHSYTSNLGDYDEQALGIMQTLGVDRQRTVESLQNSSYNHFAAIYYLLLE 343          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: BRSK1_MOUSE (BR serine/threonine-protein kinase 1 OS=Mus musculus GN=Brsk1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 52/150 (34.67%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA--HLPRYLAVPPPD------TMQQAKKIDEEILKEVVKMGF--DQNQLVESLRNRLQNEATVAYYLLLDNRFRVSS 436
            +WSCGVIL+AL  G LPFDD+N+  L +K+K G++ +P  + P  + L+  M+ V+P KR+++ +I++HPW+    H P     P P       ++    ++D ++L+ +  +G   D+ +L   LR+  +N+  + YYLLLD + R  S
Sbjct:  214 MWSCGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVEPEKRLSLEQIQKHPWYLGGKHEPDPCLEPAPGRRVAMRSLPSNGELDPDVLESMASLGCFRDRERLHRELRSEEENQEKMIYYLLLDRKERYPS 363          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: BRSK1_HUMAN (BR serine/threonine-protein kinase 1 OS=Homo sapiens GN=BRSK1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 52/150 (34.67%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA--HLPRYLAVPPPD------TMQQAKKIDEEILKEVVKMGF--DQNQLVESLRNRLQNEATVAYYLLLDNRFRVSS 436
            +WSCGVIL+AL  G LPFDD+N+  L +K+K G++ +P  + P  + L+  M+ V+P KR+++ +I++HPW+    H P     P P       ++    ++D ++L+ +  +G   D+ +L   LR+  +N+  + YYLLLD + R  S
Sbjct:  230 MWSCGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVEPEKRLSLEQIQKHPWYLGGKHEPDPCLEPAPGRRVAMRSLPSNGELDPDVLESMASLGCFRDRERLHRELRSEEENQEKMIYYLLLDRKERYPS 379          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK2_PONAB (Serine/threonine-protein kinase SIK2 OS=Pongo abelii GN=SIK2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 50/138 (36.23%), Postives = 80/138 (57.97%), Query Frame = 2
Query:   11 LYVWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKI---DEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            L +WS GV+LY L CG LPFD   +P L +++  G + +P  +S     LI RML++DP KR+TI +I++H W    +P    V  P   +    I   +E++L+ +  +G DQ + +ESL+N+  N     Y+LL++
Sbjct:  198 LDIWSMGVVLYVLVCGALPFDGPTLPILRQRVLEGRFRIPYFMSEDCEHLIRRMLVLDPSKRLTIAQIKEHKWMLIEVPVQRPVLYPQEQENEPSIGEFNEQVLRLMHSLGIDQQKTIESLQNKSYNHFAAIYFLLVE 335          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK2_HUMAN (Serine/threonine-protein kinase SIK2 OS=Homo sapiens GN=SIK2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 50/138 (36.23%), Postives = 80/138 (57.97%), Query Frame = 2
Query:   11 LYVWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKI---DEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            L +WS GV+LY L CG LPFD   +P L +++  G + +P  +S     LI RML++DP KR+TI +I++H W    +P    V  P   +    I   +E++L+ +  +G DQ + +ESL+N+  N     Y+LL++
Sbjct:  198 LDIWSMGVVLYVLVCGALPFDGPTLPILRQRVLEGRFRIPYFMSEDCEHLIRRMLVLDPSKRLTIAQIKEHKWMLIEVPVQRPVLYPQEQENEPSIGEFNEQVLRLMHSLGIDQQKTIESLQNKSYNHFAAIYFLLVE 335          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
Y7165_DICDI9.565e-2640.69Probable serine/threonine-protein kinase DDB_G0277... [more]
AAPK1_CAEEL1.249e-2532.795'-AMP-activated protein kinase catalytic subunit ... [more]
SIK1_RAT4.443e-2341.73Serine/threonine-protein kinase SIK1 OS=Rattus nor... [more]
SIK1_MOUSE7.579e-2341.73Serine/threonine-protein kinase SIK1 OS=Mus muscul... [more]
SIK2_CHICK2.880e-2237.75Serine/threonine-protein kinase SIK2 OS=Gallus gal... [more]
SIK1_HUMAN8.379e-2240.29Serine/threonine-protein kinase SIK1 OS=Homo sapie... [more]
BRSK1_MOUSE1.094e-2134.67BR serine/threonine-protein kinase 1 OS=Mus muscul... [more]
BRSK1_HUMAN1.094e-2134.67BR serine/threonine-protein kinase 1 OS=Homo sapie... [more]
SIK2_PONAB1.429e-2136.23Serine/threonine-protein kinase SIK2 OS=Pongo abel... [more]
SIK2_HUMAN1.429e-2136.23Serine/threonine-protein kinase SIK2 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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