CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7607 contig Csv1_Contig7607:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKG_ORYSJ (CBL-interacting protein kinase 16 OS=Oryza sativa subsp. japonica GN=CIPK16 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEE 307
            +WSCGV+LY L CG LPF  EN   +++KI    Y +P  +S  AR LI R+L+VDP KRI+IPEI + PWF+        VPP  T   + K  EE
Sbjct:  206 LWSCGVVLYVLLCGFLPFQHENYAKMYQKIFKAEYQVPPWVSGDARRLIVRLLVVDPAKRISIPEIMRTPWFKKGF-----VPPVPTSPVSPKKWEE 297          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK5_ARATH (CBL-interacting serine/threonine-protein kinase 5 OS=Arabidopsis thaliana GN=CIPK5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHL--PRYLAVPPPDTMQQAKKIDEE 307
            +WSCGV+LY L  G LPF DEN+ N+++KI    +  P   SP AR LI ++L+VDP +RI+IP I + PW + +   P    +  P   Q +K  +EE
Sbjct:  196 IWSCGVVLYVLLAGCLPFQDENLMNMYRKIFRADFEFPPWFSPEARRLISKLLVVDPDRRISIPAIMRTPWLRKNFTPPLAFKIDEPICSQSSKNNEEE 294          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MRKA_DICDI (Probable serine/threonine-protein kinase MARK-A OS=Dictyostelium discoideum GN=mrkA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQN 382
            VWS GV+L+ L  G LPFD +N   LF+KI  G YT+PS+L+   + LI RML+VDP KR T+ EI  HPW  +     L+    D+++      E+ +         +N L +SL N   N
Sbjct:  290 VWSMGVVLFVLVTGYLPFDGDNYVELFQKILAGNYTIPSYLTHECKSLISRMLVVDPDKRATMEEIINHPWLSSTKQIILSTTMTDSLKNLNSCLEQQINV-------ENLLNQSLNNSNNN 404          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MELK_HUMAN (Maternal embryonic leucine zipper kinase OS=Homo sapiens GN=MELK PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLL 412
            VWS G++LY L CG LPFDD+N+  L+KKI  G Y +P  LSP +  L+ +ML VDP KRI++  +  HPW    +  Y       +      +D++ + E+     +  Q +E L +  Q +   A YLLL
Sbjct:  192 VWSMGILLYVLMCGFLPFDDDNVMALYKKIMRGKYDVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNHPWI---MQDYNYPVEWQSKNPFIHLDDDCVTELSVHHRNNRQTMEDLISLWQYDHLTATYLLL 320          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK1_ORYSJ (CBL-interacting protein kinase 1 OS=Oryza sativa subsp. japonica GN=CIPK1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPD 274
            +WSCGVILY +  G LPFDD N+  L++KI  G   +P  LSP ARDL+ R+L  +PMKRI I  I++H WFQ     Y  V P D
Sbjct:  203 IWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKD---YTPVVPYD 285          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKQ_ARATH (CBL-interacting serine/threonine-protein kinase 26 OS=Arabidopsis thaliana GN=CIPK26 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVIL+ L  G LPF+D N+  L+KKI  G Y  P  LSPGA++LI R+L  +PM RITIPE+    WF+
Sbjct:  197 LWSCGVILFVLLAGYLPFEDSNLMTLYKKIIAGEYHCPPWLSPGAKNLIVRILDPNPMTRITIPEVLGDAWFK 269          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK6_ORYSJ (CBL-interacting protein kinase 6 OS=Oryza sativa subsp. japonica GN=CIPK6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ---------AHLPRYLAVPPPDTMQQAKKIDEEILKEV----VKMGFDQNQLVE 358
            +WSCGVILY L  G+LPF D+NI  L++K + G Y  P+ LS  AR LIPR+L  +P  RI++ ++ + PWF+           LP   A P P   ++A+K + E L       +  GFD + L E
Sbjct:  207 LWSCGVILYVLLAGSLPFPDDNIVTLYRKAQRGDYRCPAWLSTDARRLIPRLLDPNPTTRISVAQLVETPWFKKTSISRPVSIELPPAFADPAP-AKEEAEKDEPETLNAFHLISLSEGFDLSPLFE 332          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SAPKA_ORYSJ (Serine/threonine-protein kinase SAPK10 OS=Oryza sativa subsp. japonica GN=SAPK10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKK----IKGGIYTLPS--HLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLP 247
            VWSCGV LY +  G  PF+D + P  F+K    I G  Y++P   H+SP  RDLI R+ + +P  RI+IPEIR HPWF  +LP
Sbjct:  202 VWSCGVTLYVMLVGAYPFEDPDEPKNFRKTIQRILGVQYSIPDYVHISPECRDLIARIFVANPATRISIPEIRNHPWFLKNLP 284          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SMK3_MOUSE (Sperm motility kinase 3 OS=Mus musculus GN=Smok3a PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VW+ GV+LY +  G +PFD  +I  L K+I  G Y++PS LS   +DL+  ++  +P  R T+ E+  HPW       +   P P   Q   K D  I+K +  +GF    + +SLR R  N+   +Y LL
Sbjct:  205 VWTLGVVLYFMVTGKIPFDACSIKKLVKRILAGKYSIPSRLSAELQDLLSLLMTANPKLRPTVAEVMVHPWVTEGSGVF---PDPCEEQTPLKPDPAIVKAMGHIGFQAQDIEDSLRQRKFNQTMASYCLL 332          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK3_RAT (MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus GN=Mark3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA-HLPRYLA--VPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ R L+++P+KR T+ +I +  W  A H    L   V P   +   K+ID      +V MG+ Q ++ ESL     +E T  Y LL
Sbjct:  236 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPVKRGTLEQIMKDRWINAGHEEEELKPFVEPELDISDQKRID-----IMVGMGYSQEEIQESLSKMKYDEITATYLLL 364          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CIPKG_ORYSJ1.060e-1647.42CBL-interacting protein kinase 16 OS=Oryza sativa ... [more]
CIPK5_ARATH1.060e-1642.42CBL-interacting serine/threonine-protein kinase 5 ... [more]
MRKA_DICDI1.384e-1639.34Probable serine/threonine-protein kinase MARK-A OS... [more]
MELK_HUMAN2.361e-1637.12Maternal embryonic leucine zipper kinase OS=Homo s... [more]
CIPK1_ORYSJ3.084e-1651.16CBL-interacting protein kinase 1 OS=Oryza sativa s... [more]
CIPKQ_ARATH6.871e-1654.79CBL-interacting serine/threonine-protein kinase 26... [more]
CIPK6_ORYSJ6.871e-1639.37CBL-interacting protein kinase 6 OS=Oryza sativa s... [more]
SAPKA_ORYSJ1.172e-1549.40Serine/threonine-protein kinase SAPK10 OS=Oryza sa... [more]
SMK3_MOUSE1.999e-1535.11Sperm motility kinase 3 OS=Mus musculus GN=Smok3a ... [more]
MARK3_RAT1.999e-1536.57MAP/microtubule affinity-regulating kinase 3 OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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