CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CDR1_SCHPO (Mitosis inducer protein kinase cdr1 OS=Schizosaccharomyces pombe GN=cdr1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ--AHLPRYLAVPPPDTMQQAKKIDEEIL--KEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWSCGVILY+L    LPF  +N   ++ KI+ G Y LPS +S  A+DL+ RML V+P  RITIPE+  HP+      L    +  PP       +ID  ++    V+       ++V  L+ R  N+    Y +L
Sbjct:  187 VWSCGVILYSLLSNKLPFGGQNTDVIYNKIRHGAYDLPSSISSAAQDLLHRMLDVNPSTRITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSIDEIDPLVVDCMCVLWKKSSSKKVVRRLQQRDDNDEKYVYKVL 321          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNRK_HUMAN (SNF-related serine/threonine-protein kinase OS=Homo sapiens GN=SNRK PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 52/147 (35.37%), Postives = 71/147 (48.30%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDT-----MQQAKKIDEE-----ILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFR 427
            +WS GVIL+ L CG  PF + N       I    YT+PSH+S   +DLI RML  DP +R ++ EI  HPW Q         P P T     +   K + EE     I + V+    D++ +VE+L     N  T  Y+LL +   R
Sbjct:  198 IWSLGVILFMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECKDLITRMLQRDPKRRASLEEIENHPWLQG------VDPSPATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAERILR 338          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SIK3_MOUSE (Serine/threonine-protein kinase SIK3 OS=Mus musculus GN=Sik3 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 43/139 (30.94%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ-----AHLPRYLA-VPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLD 415
            +WS GV+LY L CG LPFD   + NL  ++  G + +P  +S     LI  ML++DP KR+++ +I +H W +      +  R +A        +Q+  +++++L  +  MG D+ + ++SLR+   +  +  Y LL D
Sbjct:  188 IWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPNKRLSMEQICRHKWMKLGDADPNFDRLIAECQQLKEERQSDPLNDDVLLAMEDMGLDKERTLQSLRSDAYDHYSAIYSLLCD 326          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CDR2_SCHPO (Mitosis inducer protein kinase cdr2 OS=Schizosaccharomyces pombe GN=cdr2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVP 265
            +WSCG+I +AL  G LPFDD+NI +L  K+  G + +PS++SP A+ L+ RML VD   RIT+ +IR+HP+    +   +++P
Sbjct:  191 IWSCGIIFFALLTGKLPFDDDNIRSLLLKVCQGQFEMPSNISPQAQHLLYRMLDVDSSTRITMEQIREHPFLSCFVHPNISIP 273          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK3_MOUSE (MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus GN=Mark3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA-HLPRYLA--VPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ R L+++P+KR T+ +I +  W  A H    L   V P   +   K+ID      +V MG+ Q ++ ESL     +E T  Y LL
Sbjct:  236 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPVKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRID-----IMVGMGYSQEEIQESLSKMKYDEITATYLLL 364          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK3_HUMAN (MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens GN=MARK3 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA-HLPRYLA--VPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ R L+++P+KR T+ +I +  W  A H    L   V P   +   K+ID      +V MG+ Q ++ ESL     +E T  Y LL
Sbjct:  259 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRID-----IMVGMGYSQEEIQESLSKMKYDEITATYLLL 387          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNRK_RAT (SNF-related serine/threonine-protein kinase OS=Rattus norvegicus GN=Snrk PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 52/147 (35.37%), Postives = 70/147 (47.62%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDT-----MQQAKKIDEE-----ILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFR 427
            +WS GVIL+ L CG  PF + N       I    YT+P  +S G RDLI RML  DP +R ++ EI  HPW Q         P P T     +   K + EE     I + V+    D++ +VE+L     N  T  Y+LL +   R
Sbjct:  198 IWSLGVILFMLVCGQPPFQEANDSETLTMIMDCKYTVPPRVSAGCRDLITRMLQRDPKRRASLEEIESHPWLQG------VDPSPATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAERILR 338          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SNRK_MOUSE (SNF-related serine/threonine-protein kinase OS=Mus musculus GN=Snrk PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 52/147 (35.37%), Postives = 70/147 (47.62%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDT-----MQQAKKIDEE-----ILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLLLDNRFR 427
            +WS GVIL+ L CG  PF + N       I    YT+P  +S G RDLI RML  DP +R ++ EI  HPW Q         P P T     +   K + EE     I + V+    D++ +VE+L     N  T  Y+LL +   R
Sbjct:  198 IWSLGVILFMLVCGQPPFQEANDSETLTMIMDCKYTVPPRVSAGCRDLITRMLQRDPKRRASLEEIESHPWLQG------VDPSPATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAERILR 338          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SMKY_MOUSE (Sperm motility kinase Y OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAH---LPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            +W+ GVILY +  G +PFD   IP L ++I  G+Y  P  +S   +DL+  ++ V+P  R T+ E+ +HPW + H   L      P P       + D +I+  +  +GF    + ESL     NE + AYYLL
Sbjct:  205 LWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGVSNELKDLLSLLMTVNPKYRPTVTEVMKHPWLRGHCKGLTNIHEEPVP------VRPDPDIVDAMQYIGFQAKDIRESLTKEKFNEMSAAYYLL 332          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: SMK2B_MOUSE (Sperm motility kinase 2B OS=Mus musculus GN=Smok2b PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VW+ GV+LY +  G +PFD  +I  L ++I  G Y +PS LS   RDLI  ++  +P  R T+ E+  HPW       +   P P   Q   K +  I+K +  +GF    + +SLR R  NE   +Y LL
Sbjct:  185 VWTLGVVLYFMVTGKVPFDAASIQKLVRQILAGKYFVPSRLSVELRDLISLLMTANPKLRPTVAEVMVHPWVTEGSGVF---PDPCEEQMPLKPNPAIVKAMGYIGFQAQDIEDSLRQRKFNETMASYCLL 312          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CDR1_SCHPO1.999e-1537.04Mitosis inducer protein kinase cdr1 OS=Schizosacch... [more]
SNRK_HUMAN2.611e-1535.37SNF-related serine/threonine-protein kinase OS=Hom... [more]
SIK3_MOUSE2.611e-1530.94Serine/threonine-protein kinase SIK3 OS=Mus muscul... [more]
CDR2_SCHPO2.611e-1544.58Mitosis inducer protein kinase cdr2 OS=Schizosacch... [more]
MARK3_MOUSE3.410e-1536.57MAP/microtubule affinity-regulating kinase 3 OS=Mu... [more]
MARK3_HUMAN3.410e-1536.57MAP/microtubule affinity-regulating kinase 3 OS=Ho... [more]
SNRK_RAT4.453e-1535.37SNF-related serine/threonine-protein kinase OS=Rat... [more]
SNRK_MOUSE4.453e-1535.37SNF-related serine/threonine-protein kinase OS=Mus... [more]
SMKY_MOUSE4.453e-1534.33Sperm motility kinase Y OS=Mus musculus PE=2 SV=1[more]
SMK2B_MOUSE4.453e-1535.88Sperm motility kinase 2B OS=Mus musculus GN=Smok2b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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