CF834842

Overview
NameCF834842
Unique NameCF834842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7607 contig Csv1_Contig7607:108..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKX_ORYSJ (CBL-interacting protein kinase 33 OS=Oryza sativa subsp. japonica GN=CIPK33 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVIL+ L  G LPF+D N+  L+KKI    +T P   S  A+ L+ R+L  +PM RITIPEI +  WF+
Sbjct:  197 LWSCGVILFVLLAGYLPFEDSNLMTLYKKISNAEFTFPPWTSFPAKRLLTRILDPNPMTRITIPEILEDEWFK 269          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: STK11_XENLA (Serine/threonine-protein kinase 11 OS=Xenopus laevis GN=stk11 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ---AHLPRYLAVPP-PDTMQQAKKI 298
            +WS GV LY +  G  PF+ +NI  LF+ I  G Y++P    P   DL+  ML  DP KR +I +IRQH WF+    H+   + +PP P+T  + + +
Sbjct:  241 IWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGDYSIPEECGPLLSDLLRGMLEYDPAKRFSIQQIRQHNWFRKKHPHMDPIVPIPPSPETKDRWRSL 338          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPKW_ORYSJ (CBL-interacting protein kinase 32 OS=Oryza sativa subsp. japonica GN=CIPK32 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVIL+ L  G LPF+D N+  L+KKI    +T P   S  A+ L+ R+L  +PM R+TIPEI +  WF+
Sbjct:  197 LWSCGVILFVLLAGYLPFEDSNLMTLYKKISNAEFTFPPWTSFPAKRLLTRILDPNPMTRVTIPEILEDEWFK 269          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK6_ARATH (CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 49/173 (28.32%), Postives = 83/173 (47.98%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL-LDNRFRVSSGYLGAEFQETMESGFNRLHPIEPAVSPVAHRA 532
            +WSCGVIL+ L  G LPF D+N+ N+++KI  G +  P  LS  AR L+ ++L  +P  RITI ++   PWF+               Q  +  +E +   +     D + LV   +++ + E   A++++ L   F +S  +   + +E  E  F    P    +S +   A
Sbjct:  207 LWSCGVILFVLLAGYLPFQDDNLVNMYRKIYRGDFKCPGWLSSDARRLVTKLLDPNPNTRITIEKVMDSPWFK--------------KQATRSRNEPVAATITTTEEDVDFLVH--KSKEETETLNAFHIIALSEGFDLSPLFEEKKKEEKREMRFATSRPASSVISSLEEAA 363          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: CIPK3_ORYSJ (CBL-interacting protein kinase 3 OS=Oryza sativa subsp. japonica GN=CIPK3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQ 235
            +WSCGVIL+ L  G LPF+DENI +L+ KI G  +T PS  S  A+ LI R+L  +P  RIT  ++ Q  WF+
Sbjct:  203 LWSCGVILFVLLAGYLPFEDENIVSLYNKISGAQFTCPSWFSAEAKRLIARILDPNPATRITTSQVLQDQWFK 275          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK2_RAT (Serine/threonine-protein kinase MARK2 OS=Rattus norvegicus GN=Mark2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA-----HLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ + LI++P KR T+ +I +  W         L  Y+  P PD        D    + +V MG+ + ++ +SL  +  NE    Y LL
Sbjct:  233 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVE-PLPDYK------DPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLL 361          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK2_MOUSE (Serine/threonine-protein kinase MARK2 OS=Mus musculus GN=Mark2 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA-----HLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ + LI++P KR T+ +I +  W         L  Y+  P PD        D    + +V MG+ + ++ +SL  +  NE    Y LL
Sbjct:  233 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVE-PLPDYK------DPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLL 361          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK2_HUMAN (Serine/threonine-protein kinase MARK2 OS=Homo sapiens GN=MARK2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQA-----HLPRYLAVPPPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ + LI++P KR T+ +I +  W         L  Y+  P PD        D    + +V MG+ + ++ +SL  +  NE    Y LL
Sbjct:  233 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDELKPYVE-PLPDYK------DPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLL 361          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK1_RAT (Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 42/134 (31.34%), Postives = 75/134 (55.97%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVP---PPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ ++L+++P+KR ++ +I +  W           P   P   +  AK+ID      +V MGF ++++ ++L ++  +E    Y LL
Sbjct:  240 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPYSEPELDLNDAKRID-----IMVTMGFARDEINDALVSQKYDEVMATYILL 368          
BLAST of CF834842 vs. ExPASy Swiss-Prot
Match: MARK1_MOUSE (Serine/threonine-protein kinase MARK1 OS=Mus musculus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 42/134 (31.34%), Postives = 75/134 (55.97%), Query Frame = 2
Query:   17 VWSCGVILYALPCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLIVDPMKRITIPEIRQHPWFQAHLPRYLAVP---PPDTMQQAKKIDEEILKEVVKMGFDQNQLVESLRNRLQNEATVAYYLL 409
            VWS GVILY L  G+LPFD +N+  L +++  G Y +P ++S    +L+ ++L+++P+KR ++ +I +  W           P   P   +  AK+ID      +V MGF ++++ ++L ++  +E    Y LL
Sbjct:  240 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPYSEPELDLNDAKRID-----IMVTMGFARDEINDALVSQKYDEVMATYILL 368          
The following BLAST results are available for this feature:
BLAST of CF834842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CIPKX_ORYSJ2.444e-1349.32CBL-interacting protein kinase 33 OS=Oryza sativa ... [more]
STK11_XENLA3.192e-1338.78Serine/threonine-protein kinase 11 OS=Xenopus laev... [more]
CIPKW_ORYSJ3.192e-1347.95CBL-interacting protein kinase 32 OS=Oryza sativa ... [more]
CIPK6_ARATH3.192e-1328.32CBL-interacting serine/threonine-protein kinase 6 ... [more]
CIPK3_ORYSJ3.192e-1349.32CBL-interacting protein kinase 3 OS=Oryza sativa s... [more]
MARK2_RAT4.168e-1333.09Serine/threonine-protein kinase MARK2 OS=Rattus no... [more]
MARK2_MOUSE4.168e-1333.09Serine/threonine-protein kinase MARK2 OS=Mus muscu... [more]
MARK2_HUMAN4.168e-1333.09Serine/threonine-protein kinase MARK2 OS=Homo sapi... [more]
MARK1_RAT4.168e-1331.34Serine/threonine-protein kinase MARK1 OS=Rattus no... [more]
MARK1_MOUSE4.168e-1331.34Serine/threonine-protein kinase MARK1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834842 ID=CF834842; Name=CF834842; organism=Citrus sinensis; type=EST; length=715bp
CTGGGCCTGACTTTATGTGTGGAGTTGTGGTGTTATATTGTATGCTCTTC
CCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTTAAG
AAAATTAAGGGTGGGATATACACTCTGCCCAGTCATTTGTCTCCGGGTGC
AAGAGATTTGATCCCAAGGATGCTTATAGTTGATCCAATGAAACGAATCA
CCATTCCTGAGATACGTCAGCACCCATGGTTCCAAGCCCATCTTCCGCGT
TATTTAGCTGTGCCCCCTCCAGATACGATGCAACAAGCAAAAAAGATTGA
TGAGGAGATTCTTAAGGAAGTGGTTAAGATGGGATTTGACCAGAACCAAC
TGGTTGAATCTCTTCGCAATAGGTTACAAAACGAGGCTACTGTTGCATAC
TATTTGCTGTTGGACAACCGATTCCGTGTTTCCAGTGGCTACCTTGGAGC
CGAGTTTCAGGAAACTATGGAATCTGGTTTCAACCGTTTGCATCCCATTG
AACCTGCTGTATCACCTGTTGCACACCGTGCTCCAGGATTCATGGATTAT
CAAGGAATGGGTTTAAGAGGACAGTTGCCATATGAAAGGAAATGGGCTCT
TGGACTACAGTCTCGAGCCCATCCACGTGAAATAATGACAGAAGTTCTGA
AAGCTTTGCAAGAACTGAATGTGGGTTGGAAGAAGATTGGGCACTATAAC
ATGAAGTGCAGATGG
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