CF834844

Overview
NameCF834844
Unique NameCF834844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            EL  L  +PP   +     + +   +A I+G  ++PY  GVF + +  P  YPF+PP+V F T ++HPNI+S+G ICLDIL    K  W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K +K  +   A+ WT+ +A
Sbjct:   10 ELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  202 IMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 537
            I GPPD+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:   43 IAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 66/151 (43.71%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCS------AGPVAEDMFHWQ---ATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            ELK L  DPP   S      A   + D   +    A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T+KYA
Sbjct:   14 ELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  166 PVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKAKYESTARSWTQKYAMG 537
            PV + DMFHW+A I GP ++PY GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T DK  Y S  R  T  YA G
Sbjct:   28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 54/141 (38.30%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 498
            EL+ L KD P    AGP +E+ +F W   I GPPD+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ ++ ++E
Sbjct:   12 ELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 486
            +L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 486
            +L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 486
            +L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 537
            E+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y S AR  T+ +A G
Sbjct:   19 EVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQG 158          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 486
            +L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
The following BLAST results are available for this feature:
BLAST of CF834844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBE2T_MOUSE5.359e-2640.85Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBCD4_DROME5.359e-2649.56Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC37_ARATH9.140e-2643.71Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC16_SCHPO1.194e-2545.67Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBC7_YEAST5.925e-2538.30Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2G1_RAT5.925e-2537.23Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE5.925e-2537.23Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN5.925e-2537.23Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2S_XENTR7.738e-2540.71Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UB2G1_MACFA1.011e-2437.23Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834844 ID=CF834844; Name=CF834844; organism=Citrus sinensis; type=EST; length=693bp
CCTTCATTGTTCTCTATATCTTTCTCCGTCTCTCTAGAACTTCGTTTCCG
TCCCCTTGGTCAAAGACGATCTTCGAGAAAACGTAGTTTGTTCCTGTCTT
CGAAGAGAATCTTGAAGGAGCTCAAGGATCTTCAGAAAGATCCTCCCACC
TCTTGCAGTGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAAC
CATAATGGGCCCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCTAGTTT
CAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTCGCGTTT
AGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGCAGTATATGTCT
CGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTATATCTAAGGTAT
TGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAGATGACCCTTTG
GTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCTAAGTATGAATC
AACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTAAGTATGAAATC
ATCTAGGACATAGTCTTTCATCACATAATATTTATGTATAAAATGAAGTG
TGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGAAATGATAATTG
AAGATGGTGTTCATGCACTGTCTTCCATCAAAACAAGATTGAT
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