CF834844

Overview
NameCF834844
Unique NameCF834844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 477
            ELK LQ++P        V E D+++W+  I GPP++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:   16 ELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E K  +KD P    A PV +     D+  W+A I G   + +AGGV+ +++ +P +YP KPPKV F    +HPN+  +G+ICL IL E   W PA+T+ +++L +  LL  PNP+ P        +  +KA+Y+       ++Y+
Sbjct:   12 ERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  127 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            D+ K   +      V +D+  +  T  GP DS Y GGV+ + +  P  YP+K P V F  K++HPN++ S+G++CLD++ + WSP   +  V  S +  LL  PNP DP   E A +   D+A YE   + + +KYA
Sbjct:   11 DMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYA 147          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 477
            ELK LQ++P        V E D+++W+  I GPP++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+
Sbjct:   16 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 477
            ELK LQ++P        V E D+++W+  I GPP++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+
Sbjct:   16 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 477
            E + L ++P  +        +M  W   + GP D+ Y GG+F   I FPP+YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSP   I  +LLS+ SLL +PN D P   + A  Y+
Sbjct:    9 EYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 42/120 (35.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  175 EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E +  W   ++ P  +PY  G F + I+FPP YPF PPK+ F+TK++HPN++  G +CL I+  + W P     +VL ++ +++ +P P+ PL  ++A  +  +  K+  TA  +T+K A
Sbjct:   30 ESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNA 148          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKA 489
            EL  L        SA P ++++F W  TI G   + Y    + +S+ FP  YP+  P V F T  +HPN+++ G+ICLDILKE+WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   38 ELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  169 VAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            V E++F W+  I GP +S Y    F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++ SI  LL  PNP+DP   E+A +Y+ DK  Y+   R + + ++
Sbjct:   32 VDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E K  +KD P    A PV       ++F+W+  I G  D+ + GG++ + + F  D+P  PPK  F   +FHPN+  +G++CL +L E   W P+++I ++L+ I  LL  PN +DP   E   +Y  ++A+YE   +    KYA
Sbjct:   12 ERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156          
The following BLAST results are available for this feature:
BLAST of CF834844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UB2R2_HUMAN2.330e-2138.06Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBC9_YEAST3.043e-2135.17SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC6_ARATH3.974e-2136.50Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UB2R1_MOUSE6.779e-2137.31Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN6.779e-2137.31Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFP48.853e-2137.50Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC84_DROME8.853e-2135.00Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBE2C_HUMAN1.156e-2040.32Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC1_MIMIV1.156e-2039.34Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC9_CAEEL1.510e-2034.48SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834844 ID=CF834844; Name=CF834844; organism=Citrus sinensis; type=EST; length=693bp
CCTTCATTGTTCTCTATATCTTTCTCCGTCTCTCTAGAACTTCGTTTCCG
TCCCCTTGGTCAAAGACGATCTTCGAGAAAACGTAGTTTGTTCCTGTCTT
CGAAGAGAATCTTGAAGGAGCTCAAGGATCTTCAGAAAGATCCTCCCACC
TCTTGCAGTGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAAC
CATAATGGGCCCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCTAGTTT
CAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTCGCGTTT
AGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGCAGTATATGTCT
CGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTATATCTAAGGTAT
TGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAGATGACCCTTTG
GTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCTAAGTATGAATC
AACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTAAGTATGAAATC
ATCTAGGACATAGTCTTTCATCACATAATATTTATGTATAAAATGAAGTG
TGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGAAATGATAATTG
AAGATGGTGTTCATGCACTGTCTTCCATCAAAACAAGATTGAT
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