CF834844

Overview
NameCF834844
Unique NameCF834844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10893 contig Csv1_Contig10893:58..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.110e-47
Identity = 86/138 (62.32%), Postives = 108/138 (78.26%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            EL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:   69 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.110e-47
Identity = 86/138 (62.32%), Postives = 108/138 (78.26%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            EL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:   69 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 85/138 (61.59%), Postives = 107/138 (77.54%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            EL ++  DPP +CSAGP  ++++ W +TI+GPP S Y GGVF + IHF P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y  ++ +++  AR WT++YA
Sbjct:   94 ELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRYA 231          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 66/138 (47.83%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E+ +L  DPP  CSAGP  ++++HW ATI+GP  +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TD+ K++  A+ WT ++A
Sbjct:   44 EMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  157 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            S G  + +++ W A I GP  +PY GG+F +SI FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K ++ +++  AR +T ++A
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.171e-35
Identity = 70/139 (50.36%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +KTD+  +  TA+ WT+KYA
Sbjct:   10 EITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 537
            E + L  +P    SA P  E+M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K+++A+   TA+ WT+ YA G
Sbjct:   13 ETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.346e-34
Identity = 69/140 (49.29%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 537
            E + L  +P    SA P  ++M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K+++A+   TA+ WT+ YA G
Sbjct:   13 ETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L ++P    +A P   +  ++   + GP DSP+ GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K ++A+    AR WTQKYA+
Sbjct:   11 ETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAV 149          
The following BLAST results are available for this feature:
BLAST of CF834844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UB2E3_HUMAN1.110e-4762.32Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.110e-4762.32Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBCD2_DROME1.449e-4761.59Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
COP10_ARATH5.520e-3947.83Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC31_ARATH8.812e-3752.80Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBCB_DICDI2.171e-3550.36Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC36_ARATH2.400e-3450.00Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH5.346e-3449.29Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_MACFA2.032e-3347.48Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_DROME3.465e-3346.76Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834844 ID=CF834844; Name=CF834844; organism=Citrus sinensis; type=EST; length=693bp
CCTTCATTGTTCTCTATATCTTTCTCCGTCTCTCTAGAACTTCGTTTCCG
TCCCCTTGGTCAAAGACGATCTTCGAGAAAACGTAGTTTGTTCCTGTCTT
CGAAGAGAATCTTGAAGGAGCTCAAGGATCTTCAGAAAGATCCTCCCACC
TCTTGCAGTGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAAC
CATAATGGGCCCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCTAGTTT
CAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTCGCGTTT
AGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGCAGTATATGTCT
CGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTATATCTAAGGTAT
TGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAGATGACCCTTTG
GTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCTAAGTATGAATC
AACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTAAGTATGAAATC
ATCTAGGACATAGTCTTTCATCACATAATATTTATGTATAAAATGAAGTG
TGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGAAATGATAATTG
AAGATGGTGTTCATGCACTGTCTTCCATCAAAACAAGATTGAT
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