CF834844

Overview
NameCF834844
Unique NameCF834844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10893 contig Csv1_Contig10893:58..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 64/126 (50.79%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY 495
            + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +++HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  +K +Y
Sbjct:   12 DFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.720e-32
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 534
            E + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   11 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.720e-32
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++ +  + AR WT+ YA
Sbjct:   11 ETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTAR-----SWT 519
            + K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:   12 DFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 61/139 (43.88%), Postives = 90/139 (64.75%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E  DL++ P        V +++FHW  T +GP DS YAGG F  S+ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y+ D+  ++  AR + +++A
Sbjct:   15 EYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CF834844 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.535e-32
Identity = 65/140 (46.43%), Postives = 91/140 (65.00%), Query Frame = 1
Query:  118 ELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 531
            E++ ++ DP    +   V+E D+ H + T +GPP +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:   10 EIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
The following BLAST results are available for this feature:
BLAST of CF834844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC3_ARATH3.465e-3350.79Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2N_PONAB5.911e-3347.48Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE5.911e-3347.48Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN5.911e-3347.48Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN5.911e-3347.48Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_RAT1.720e-3246.76Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI1.720e-3247.83Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_ARATH5.004e-3247.48Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC14_SCHPO5.004e-3243.88Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC1_YEAST8.535e-3246.43Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834844 ID=CF834844; Name=CF834844; organism=Citrus sinensis; type=EST; length=693bp
CCTTCATTGTTCTCTATATCTTTCTCCGTCTCTCTAGAACTTCGTTTCCG
TCCCCTTGGTCAAAGACGATCTTCGAGAAAACGTAGTTTGTTCCTGTCTT
CGAAGAGAATCTTGAAGGAGCTCAAGGATCTTCAGAAAGATCCTCCCACC
TCTTGCAGTGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAAC
CATAATGGGCCCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCTAGTTT
CAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTCGCGTTT
AGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGCAGTATATGTCT
CGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTATATCTAAGGTAT
TGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAGATGACCCTTTG
GTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCTAAGTATGAATC
AACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTAAGTATGAAATC
ATCTAGGACATAGTCTTTCATCACATAATATTTATGTATAAAATGAAGTG
TGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGAAATGATAATTG
AAGATGGTGTTCATGCACTGTCTTCCATCAAAACAAGATTGAT
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