CF834846

Overview
NameCF834846
Unique NameCF834846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:112..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 3.804e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.107e-52
Identity = 95/150 (63.33%), Postives = 122/150 (81.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH            VSKK+
Sbjct:    3 LVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.353e-50
Identity = 94/150 (62.67%), Postives = 118/150 (78.67%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGKY Q+ S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH            VSKK+
Sbjct:    3 LVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 95/150 (63.33%), Postives = 116/150 (77.33%), Query Frame = -2
Query:  232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681
            LV  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK  Q+++N +D KLR+DLERLKKI+ HRGLRH   LRVRGQH            VSKK+
Sbjct:    3 LVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 85/132 (64.39%), Postives = 110/132 (83.33%), Query Frame = -2
Query:  286 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 681
            LV   +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E++ L  ++ +PRQ+ IP WFLNRQKD KDGKYS  ++N +D+K R+DLERLKKIR HRG+RH++GLRVRGQ
Sbjct:    5 LVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 84/127 (66.14%), Postives = 106/127 (83.46%), Query Frame = -2
Query:  283 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 663
            FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK    ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH
Sbjct:   11 FQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.771e-42
Identity = 76/133 (57.14%), Postives = 108/133 (81.20%), Query Frame = -2
Query:  283 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 681
            + +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE++ ++ ++     +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E LKK+R HRGLRHYWGLRVRGQ+
Sbjct:    4 VTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 55/131 (41.98%), Postives = 87/131 (66.41%), Query Frame = -2
Query:  286 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 678
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+   ++ + L+M LRDDL R+K IR+++G RH  GL VRGQ
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131          
The following BLAST results are available for this feature:
BLAST of CF834846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_CAPHI3.804e-5365.3340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]
RS18_CANFA3.804e-5365.3340S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN3.804e-5365.3340S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_SPOFR1.107e-5263.3340S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME1.353e-5062.6740S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO1.145e-4963.3340S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI2.388e-4764.3940S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST4.504e-4666.1440S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI1.771e-4257.1440S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST2.745e-2741.9830S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834846 ID=CF834846; Name=CF834846; organism=Citrus sinensis; type=EST; length=682bp
AATTCATGAGATAAAAGAGGGAGATGAAATATATGTTGCCATATATCTGA
ATAAAAATATTACCATAGAGAAAATAATACCTAAAAGACAGACAGTTCAA
ATGCTTAAAACCCATCCAAAGAAAAGAAAATAAATCTAATATTGTCTGAT
GCAAATGTTCAGCAATAGCAAGTCCAAACTCTTCCTGAACATGTGTATAG
ATTGTTCAAAACATTGATAAAGGACAGCTCAACGCTTCTTGGAGACACCA
ACAGTCTTTCCACGACGGCCGGTGGTCTTGGTGTGTTGTCCACGGACACG
AAGACCCCAGTAGTGCCTGAGACCACGGTGGTTCCTGATCTTCTTCAGAC
GCTCCAAGTCATCTCTCAACTTCATGTCCAGTGCATTGGATACAACCTGA
GAATACTTTCCATCCTTGTAATCCTTCTGTCTGTTCAAGAACCAATCAGG
GATTTTAAACTGTCGGGGATTTGCAACAACGACCATGAGATTGTCAAGTT
CAGCAGCAGATAGTTCACCGGCCCTCTTGTTCATGTCAACATCAGCTTTC
TTGCAAACGATGTTAGCCAGTCGCCTTCCAATACCCTTAATTGAAGTAAG
AGCAAACATAATCTTCTGCTTCCCGTCGACGTTAGTGTTCAGCACACGCA
AAATGTGCTGAAAATCTTCGTTCGCCACCAGA
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