CF834846

Overview
NameCF834846
Unique NameCF834846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:112..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 52/128 (40.62%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  286 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 669
            E+F+H++R+   ++DG + +  ALTSIKG+G+ L+  +   A  D+N+R G LS  E++ L   + NP ++ IP W +NR+ DY+ G+   ++ + L+M LR+DL R++K R+++G RH  GL VRGQ
Sbjct:    3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 53/128 (41.41%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  286 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 669
            +DF+H++R+   +VDG + I  ALT IKG+G  L+  +C+  D+D   + G ++  ++  +  ++ NP++F IP+W LNR++DY+ G+   ++ + LDM LRDDL R+KK R+++G RH  GL VRGQ
Sbjct:    3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQ 130          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 57/145 (39.31%), Postives = 91/145 (62.76%), Query Frame = -2
Query:  232 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 666
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +NR KDY+ GK   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ             VSKK+
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 54/133 (40.60%), Postives = 89/133 (66.92%), Query Frame = -2
Query:  286 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA--NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 678
            +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A  +C++  +D  K+ GELS  E++ +   +   +  +  IP W  NRQKDY+ G+   +V   L+M ++ D++RLKKIR +RG+RH  GL VRGQ
Sbjct:    1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQ 133          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = -2
Query:  286 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 681
            +++ + +++I+R+L T++ G  K+ + L  +KGIG  LA  +C+   +D NKR G L+ AE++ +   +ANP    IP W LNR+KDY+ GK   +V   L   ++ D+ER K+IR+ RG+RH  GL+VRGQ
Sbjct:    1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 53/127 (41.73%), Postives = 87/127 (68.50%), Query Frame = -2
Query:  286 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 666
            +F+HI+RV   ++DG +++ +ALT+IKGIG   A +VC+ A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 52/127 (40.94%), Postives = 86/127 (67.72%), Query Frame = -2
Query:  286 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 666
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +NR KDY+ G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 51/129 (39.53%), Postives = 85/129 (65.89%), Query Frame = -2
Query:  286 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 672
            NE+FQ+I+R+ N +++G++ +  AL  +KGIG RL+  + KK D+D ++R GEL   +++ L   +       IP W  N ++D   GK   +VSN LD+++ DD+  +KK+R+++G+RH  GL+VRGQ
Sbjct:    8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 52/129 (40.31%), Postives = 84/129 (65.12%), Query Frame = -2
Query:  286 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 672
            N +F++++RV  T++DG +K++ AL  I G+G  +A  + + A +D NK AG L+  E+  +  V+A+P +F IP W  NR+KDY  G+   V+ + L +  ++D+ RLK+IR +RG+RH  GL  RGQ
Sbjct:    3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131          
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = -2
Query:  232 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 666
            ++++I+R+  T++DG  K ++ L  IKG+G  LA  +C++  +D   R G L+  E+  +  +++NP  + IP W LNR+KDY  GK   ++   L   ++ D+ER KKI++ RG+RH  GL+VRGQ             V KKR
Sbjct:    6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150          
The following BLAST results are available for this feature:
BLAST of CF834846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METTH3.964e-2640.6330S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_METS35.177e-2641.4130S ribosomal protein S13P OS=Methanobrevibacter s... [more]
RS13_PYRHO5.724e-2539.3130S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_METKA2.175e-2440.6030S ribosomal protein S13P OS=Methanopyrus kandler... [more]
RS13_HYPBU2.175e-2440.9130S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_PYRFU2.841e-2441.7330S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_PYRAB3.710e-2440.9430S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_PICTO6.328e-2439.5330S ribosomal protein S13P OS=Picrophilus torridus... [more]
RS13_METJA1.079e-2340.3130S ribosomal protein S13P OS=Methanocaldococcus j... [more]
RS13_STAMF3.141e-2336.5530S ribosomal protein S13P OS=Staphylothermus mari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834846 ID=CF834846; Name=CF834846; organism=Citrus sinensis; type=EST; length=682bp
AATTCATGAGATAAAAGAGGGAGATGAAATATATGTTGCCATATATCTGA
ATAAAAATATTACCATAGAGAAAATAATACCTAAAAGACAGACAGTTCAA
ATGCTTAAAACCCATCCAAAGAAAAGAAAATAAATCTAATATTGTCTGAT
GCAAATGTTCAGCAATAGCAAGTCCAAACTCTTCCTGAACATGTGTATAG
ATTGTTCAAAACATTGATAAAGGACAGCTCAACGCTTCTTGGAGACACCA
ACAGTCTTTCCACGACGGCCGGTGGTCTTGGTGTGTTGTCCACGGACACG
AAGACCCCAGTAGTGCCTGAGACCACGGTGGTTCCTGATCTTCTTCAGAC
GCTCCAAGTCATCTCTCAACTTCATGTCCAGTGCATTGGATACAACCTGA
GAATACTTTCCATCCTTGTAATCCTTCTGTCTGTTCAAGAACCAATCAGG
GATTTTAAACTGTCGGGGATTTGCAACAACGACCATGAGATTGTCAAGTT
CAGCAGCAGATAGTTCACCGGCCCTCTTGTTCATGTCAACATCAGCTTTC
TTGCAAACGATGTTAGCCAGTCGCCTTCCAATACCCTTAATTGAAGTAAG
AGCAAACATAATCTTCTGCTTCCCGTCGACGTTAGTGTTCAGCACACGCA
AAATGTGCTGAAAATCTTCGTTCGCCACCAGA
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