CF834846
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17 Identity = 42/127 (33.07%), Postives = 76/127 (59.84%), Query Frame = -2 Query: 286 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 666 +F+H +R+ T+++GK + +AL +KGIGR +A V + ++D ++AG L+ ++ + V+ +P IP W NR+KD G ++ L + +++D+ +KKIR ++G+RH L RGQ Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQ 131
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = -2 Query: 286 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 669 E+ ++ +RV NT++DG + + ALT IKGIG + + A VD + G+L + + V + ++PDW +NRQKD G+ ++ L M DD+ R++K+R++RG+RH G +VRGQ Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQ 130
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_METLZ (30S ribosomal protein S13P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps13p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17 Identity = 51/151 (33.77%), Postives = 80/151 (52.98%), Query Frame = -2 Query: 232 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV-ANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 681 +V + ++ +R++NT++DG Q + ALT IKGIG A I+ ++A VD G L ++ + V A P +P W +NR D G+ + + L + DD+ +KK+R +RG+RH GL+VRGQ VSK+R Sbjct: 1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPAS--VPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRHENGLKVRGQRTKATGRFGKIVGVSKRR 149
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16 Identity = 42/128 (32.81%), Postives = 79/128 (61.72%), Query Frame = -2 Query: 286 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 669 ++ + I+R+ +T++DG + + +AL I+GIG A +C+K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RH GL+VRGQ Sbjct: 3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_HALWD (30S ribosomal protein S13P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps13p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16 Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = -2 Query: 286 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 672 ++D Q+ +R+ T++DG + + +LT +KGIG+R A I+ A VD + G L E+D++ V N IP W NR++D+ G L+ K R D+ R+K I +++G+RH G +VRGQ Sbjct: 15 DDDLQYFVRIGTTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVEN-LDDHIPGWMTNRREDFFSGDTDHKTGADLEEKRRHDVNRMKMIDSYKGVRHKRGQKVRGQ 142
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_CENSY (30S ribosomal protein S13P OS=Cenarchaeum symbiosum GN=rps13p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16 Identity = 39/128 (30.47%), Postives = 77/128 (60.16%), Query Frame = -2 Query: 286 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 669 ++++HI+R+L ++ G++K + L I+GIG A + +D N G L+ ++ ++ ++ +P P WFLNR+KD + G+ + ++ ++ +R+D+ER + + +G RH +GL+VRGQ Sbjct: 49 QEYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIEKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFGLKVRGQ 176
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PYRAE (30S ribosomal protein S13P OS=Pyrobaculum aerophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16 Identity = 42/129 (32.56%), Postives = 80/129 (62.02%), Query Frame = -2 Query: 286 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 672 +++ + I+R+ +T++DG +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RH GL+VRGQ Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_PYRAR (30S ribosomal protein S13P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps13p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16 Identity = 42/129 (32.56%), Postives = 80/129 (62.02%), Query Frame = -2 Query: 286 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 672 +++ + I+RV +T+++G +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ +KK+++ +G+RH GL+VRGQ Sbjct: 2 SQELRAIVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVRNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_HALSA (30S ribosomal protein S13P OS=Halobacterium salinarium GN=rps13p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15 Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = -2 Query: 286 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 672 +ED Q+ +R+ T++DG + + AL + G+GRR+A IV +A VD G L ++++ V + + P W NRQ D+ G+ + +++ D+ R++ IR+++G+RH G +VRGQ Sbjct: 10 DEDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFTEHA-PAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHERGQKVRGQ 137
BLAST of CF834846 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14 Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = -2 Query: 286 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 654 I+ + + ++DG + I L + G+ A+ VC +D ++ G LS EL+ L + NP ++ IP W NR++D + GK +V N + + D++R +I + RG RH GL VRGQ Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQ 135 The following BLAST results are available for this feature:
BLAST of CF834846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834846 ID=CF834846; Name=CF834846; organism=Citrus sinensis; type=EST; length=682bpback to top |