CF834854

Overview
NameCF834854
Unique NameCF834854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.475e-30
Identity = 68/118 (57.63%), Postives = 79/118 (66.95%), Query Frame = -2
Query:   22 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 372
            Y GS FHRVI  FM Q           G SIYG +F DENF  +H GPG LSMANAG  TNGSQFF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:   70 YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.222e-30
Identity = 65/121 (53.72%), Postives = 77/121 (63.64%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   +K S FHRV+P F+CQ           G+SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2933 KGFGFKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.222e-30
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 387
            G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:   55 GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.222e-30
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 387
            G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:   55 GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.222e-30
Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 384
            K   YK S FHRVI  FM Q           G+SIYG +F DENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K V+I D G++
Sbjct:   84 KGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.514e-30
Identity = 69/126 (54.76%), Postives = 80/126 (63.49%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE--KVG-SSSGRTNKPVVIADCGQL 387
            G+P  YKGS FHR+IP FMCQ              I+G K F DENF  KH  PG+LSMANAGP TNGSQFF+ T  T +LD KHVVFG+V EGMDVVK +E  K G       N  VVI+ CG++
Sbjct:   57 GRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.406e-30
Identity = 70/128 (54.69%), Postives = 82/128 (64.06%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXG---ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 387
            GKPL YK S FHRVI  FMCQ           G   ESIYG KF DENF   H  P +LSMAN+GP TNGSQFF+ T  T  LDGKHVVFG+V+EG  +V+ +E+  S  G  ++PV    IADCG+L
Sbjct:   51 GKPLSYKDSIFHRVIKDFMCQGGDFTAPSDHLGTGGESIYGEKFEDENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLER--SEKGANDRPVEDWKIADCGEL 176          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.228e-29
Identity = 63/123 (51.22%), Postives = 80/123 (65.04%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            G+P  YK S FHRVI  FM Q             +IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+ V I  CG++
Sbjct:   59 GRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.228e-29
Identity = 66/120 (55.00%), Postives = 77/120 (64.17%), Query Frame = -2
Query:   28 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 387
            G+ L YKGS FHRVI  FM Q           GESIYG KF DENF  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V++G   V+ IE + + +     PVVI +CG
Sbjct:   46 GRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.604e-29
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            GKP  YK S FHRVI  FM Q             +IYG+ KFADENFV KH   G+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQVV+GMD+V+ IE   +   + ++ V+I  CG++
Sbjct:   59 GKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
The following BLAST results are available for this feature:
BLAST of CF834854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
CYP6_CAEEL2.475e-3057.63Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
RBP2_MOUSE4.222e-3053.72E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIH_HUMAN4.222e-3051.20Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN4.222e-3051.20Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIB_MOUSE4.222e-3054.92Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIH_GIBZE5.514e-3054.76Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPID_CANAL9.406e-3054.69Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
PPIH_ASPOR1.228e-2951.22Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_SCHPO1.228e-2955.0040 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPIH_ASPFU1.604e-2952.03Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834854 ID=CF834854; Name=CF834854; organism=Citrus sinensis; type=EST; length=388bp
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGTGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGGGATCCGTTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCGTAGATTGATTCGCCTCCGGTTCC
GTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACAC
GGTGGAAGGACGAGCCTTTGTAGGGGAGAGGCTTGCCG
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