CF834854

Overview
NameCF834854
Unique NameCF834854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL2_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo sapiens GN=PPIL2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = -2
Query:   49 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 372
            Y G+ FHR I  F+ Q            ES +G  F DE      HTG GILSMAN+GP +N SQFF+      +LD KH +FG+VV G DV+ A+E V  S  +T++P
Sbjct:  316 YDGTIFHRSIRNFVIQGGDPTGTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV-ESDPKTDRP 422          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIB_STRCH (Peptidyl-prolyl cis-trans isomerase B OS=Streptomyces chrysomallus GN=cypB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = -2
Query:   46 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKK-HTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV--VEGMDVVKAIEKVGSSSGRTNKPV 372
            Y G+ FHRVI GFM Q                G KFADE   +   T P +L+MANAGPGTNGSQFF+  + T WL GKH +FG+V    G  VV AI     ++ RT++P+
Sbjct:   56 YDGTVFHRVISGFMIQGGDPLGNGTGGP----GYKFADEFHPELGFTQPYLLAMANAGPGTNGSQFFLTVSPTAWLTGKHTIFGEVSGEAGRKVVDAIAAT-PTNPRTDRPL 162          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_MYCTU (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium tuberculosis GN=ppiA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.938e-15
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = -2
Query:   40 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 372
            Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.938e-15
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = -2
Query:   40 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 372
            Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL3_RAT (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.837e-15
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = -2
Query:   79 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 372
            Y G  FHR I GFM Q             SI+G KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   37 YNGCVFHRNIKGFMVQTGDPTGTGRGG-SSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL3_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.837e-15
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = -2
Query:   79 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 372
            Y G  FHR I GFM Q             SI+G KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   37 YNGCIFHRNIKGFMVQTGDPTGTGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL3_CHICK (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.837e-15
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = -2
Query:   79 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 372
            Y G  FHR I GFM Q             SI+G KF DE +   KH+  G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   37 YNGCVFHRNIKGFMVQTGDPLGTGKGGT-SIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.544e-15
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = -2
Query:   34 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIAD 372
            Y+ + FHR I  FM Q            +SI+G  F DE F    KH   GI+SMAN G  TNGSQFF+     + LD KH +FG+VV G++V+ A+EKV ++S    K P+ + D
Sbjct:  312 YRNTIFHRNIARFMIQGGDPSGTGRGG-QSIWGKPFKDE-FCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLED 425          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.547e-15
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = -2
Query:   43 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV 372
            Y  + FHR+I  FM Q            ESI+   F+DE F+    H   G+LSMAN G  TNGSQFF+     ++LD KH +FG++V G D +  IEK+ +  G T+ P+V
Sbjct:  316 YNNTKFHRLIKNFMLQGGDPTGTGHGG-ESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEG-TDVPMV 424          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL2_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae GN=CYP8 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.116e-14
Identity = 49/115 (42.61%), Postives = 62/115 (53.91%), Query Frame = -2
Query:   34 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIAD 372
            YKG +FHR IP FM Q            +S++G  F DE +    H G G LSMAN G  TN SQFF     T  LD KH VFG+VVE ++V+  +E V +  S R    ++I D
Sbjct:  359 YKGVAFHRNIPNFMIQGGDPSGSGRGG-QSVWGKYFDDEFDGPMTHNGRGTLSMANKGKNTNSSQFFFAYKPTPHLDRKHTVFGKVVENINVLSKMENVPTDGSNRPLNKILIKD 472          
The following BLAST results are available for this feature:
BLAST of CF834854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PPIL2_HUMAN2.249e-1544.04Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo... [more]
PPIB_STRCH2.249e-1545.54Peptidyl-prolyl cis-trans isomerase B OS=Streptomy... [more]
PPIA_MYCTU2.938e-1544.35Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIA_MYCBO2.938e-1544.35Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL3_RAT3.837e-1544.44Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ratt... [more]
PPIL3_HUMAN3.837e-1544.44Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
PPIL3_CHICK3.837e-1544.44Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gall... [more]
PPIL2_SCHPO6.544e-1542.24Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]
CYP4_CAEEL8.547e-1541.07Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL2_GIBZE1.116e-1442.61Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834854 ID=CF834854; Name=CF834854; organism=Citrus sinensis; type=EST; length=388bp
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGTGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGGGATCCGTTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCGTAGATTGATTCGCCTCCGGTTCC
GTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACAC
GGTGGAAGGACGAGCCTTTGTAGGGGAGAGGCTTGCCG
back to top