CF834854

Overview
NameCF834854
Unique NameCF834854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query:   79 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 372
            Y  + FHR I GFM Q            ESI+  +F DE F    KH   GILSMAN+GP TNGSQFF+   K   L+  + VFG+++ G++V+  +EKV
Sbjct:   37 YNNTIFHRNIKGFMIQGGDPTNTGRGG-ESIWKKQFKDE-FPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKV 134          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 44/99 (44.44%), Postives = 52/99 (52.53%), Query Frame = -2
Query:   79 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 372
            Y    FHR I  FM Q            ESI+   F DE     KH   G+LSMAN G  TNGSQFF+  A    LDG H VFG+VV G+DV+  +E +
Sbjct:  322 YNDVIFHRNIKKFMIQGGDPTGTGKGG-ESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESI 419          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL3_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neurospora crassa GN=cyp-10 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.328e-12
Identity = 41/91 (45.05%), Postives = 49/91 (53.85%), Query Frame = -2
Query:  115 YKGSSFHRVIPGFMCQXXXXXXXXXXXG----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV 372
            Y  S FHR+IP FM Q                 SIYG  F DE   V +H   GI+SMAN GP TNGSQFF+   K   LDG + VFG+++
Sbjct:   37 YNASPFHRMIPSFMVQTGAPANPSPPENPKGGRSIYGPTFEDEIRPVLRHNERGIVSMANKGPNTNGSQFFILFDKAPHLDGLNTVFGKLI 127          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL2_USTMA (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Ustilago maydis GN=CYP8 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = -2
Query:   46 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE---NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD--VVKAIEKVGSSSGRTNKPV 372
            Y  + FHR IPGFM Q             SI+ S F DE       KH   G+LSMAN G  TN SQFF+       LDGKH VFG++V+G     +  +E+V S  G T++P+
Sbjct:  329 YDDTLFHRNIPGFMIQGGDPTGTGRGG-SSIWNSNFRDEFNEPGAFKHDTRGVLSMANKGKDTNASQFFITYRGVPHLDGKHTVFGRLVDGDKDATLTKMEQVPSEQG-TDRPL 440          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 45/116 (38.79%), Postives = 58/116 (50.00%), Query Frame = -2
Query:   34 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKVGS-SSGRTNKPVVIAD 372
            Y+  +FHR I  FM Q             SI+G  F DE      H+  GI+SMAN G  TN SQFF+       LD KH +F +V+EG D  + A+E V +  S R    +VI D
Sbjct:  366 YRDVAFHRSIRNFMIQGGDPSGTGRGG-SSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKD 480          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -2
Query:  118 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 372
            Y  + FHRV+PGF+ Q            ESIYG+ F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   49 YDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.361e-11
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = -2
Query:  118 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 372
            Y  + FHRV+PGF+ Q            ES+YG+ F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   49 YDNTIFHRVVPGFIVQGGDPTGTGTGG-ESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = -2
Query:  118 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 372
            Y  + FHRV+PGF+ Q            ESIYG  F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   49 YDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
The following BLAST results are available for this feature:
BLAST of CF834854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PPIL3_DICDI6.125e-1344.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPIL2_RHIOR6.125e-1344.44Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPIL3_NEUCR2.328e-1245.05Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neur... [more]
PPIL2_USTMA3.970e-1241.23Peptidyl-prolyl cis-trans isomerase-like 2 OS=Usti... [more]
PPIL2_NEUCR1.155e-1138.79Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
SDC10_MOUSE2.573e-1141.86Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
SDC10_RAT3.361e-1140.70Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]
SDC10_BOVIN5.733e-1141.86Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834854 ID=CF834854; Name=CF834854; organism=Citrus sinensis; type=EST; length=388bp
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGTGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGGGATCCGTTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCGTAGATTGATTCGCCTCCGGTTCC
GTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACAC
GGTGGAAGGACGAGCCTTTGTAGGGGAGAGGCTTGCCG
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