CF834854

Overview
NameCF834854
Unique NameCF834854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 2.306e-44
Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   44 KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 3.012e-44
Identity = 84/122 (68.85%), Postives = 93/122 (76.23%), Query Frame = -2
Query:   19 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 384
            K   YKGS+FHRVIP FMCQ           G+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:   85 KGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.934e-44
Identity = 84/122 (68.85%), Postives = 92/122 (75.41%), Query Frame = -2
Query:   19 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 384
            K   YKGS+FHRVIP FMCQ           G SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:   85 KGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 8.763e-44
Identity = 82/121 (67.77%), Postives = 95/121 (78.51%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:   44 KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.763e-44
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            GK L YKGS+FHR+IPGFMCQ           GESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:   50 GKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.952e-43
Identity = 86/122 (70.49%), Postives = 92/122 (75.41%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            GKPL YKGSSFHRVI  FMCQ           GESIYG+KFADENF  KH G G LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:   58 GKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.819e-42
Identity = 80/121 (66.12%), Postives = 91/121 (75.21%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   YKGS+FHRVIPGFMCQ           G+SIYG KFADENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   44 KGFGYKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.808e-42
Identity = 81/122 (66.39%), Postives = 91/122 (74.59%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            GKPL +KGS FHR+IP FM Q           GESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF+CT KT WLDGKHVVFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:   50 GKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.202e-42
Identity = 80/121 (66.12%), Postives = 90/121 (74.38%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   YKGS FHRVIP FMCQ           G+SIYG+KF DENF  KHTGPGIL MANAGP TNGSQFF+ TAKT WLD +HVVFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:   44 KGFGYKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.068e-41
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            GK L +KGS FHR+IP FM Q           GESI+G KF DENF +KHTGPG+LSMAN G  TNGSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:   50 GKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
The following BLAST results are available for this feature:
BLAST of CF834854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PPIA_AOTTR2.306e-4467.77Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPIF_RAT3.012e-4468.85Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE3.934e-4468.85Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_RABIT8.763e-4467.77Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
CP19C_ARATH8.763e-4468.85Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIA_DICDI1.952e-4370.49Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIA_HEMPU2.819e-4266.12Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
CYP7_CAEEL4.808e-4266.39Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIA_BLAGE8.202e-4266.12Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
CYP2_CAEEL9.068e-4164.75Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834854 ID=CF834854; Name=CF834854; organism=Citrus sinensis; type=EST; length=388bp
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGTGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGGGATCCGTTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCGTAGATTGATTCGCCTCCGGTTCC
GTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACAC
GGTGGAAGGACGAGCCTTTGTAGGGGAGAGGCTTGCCG
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