CF834854

Overview
NameCF834854
Unique NameCF834854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 79/117 (67.52%), Postives = 90/117 (76.92%), Query Frame = -2
Query:   22 YKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 372
            YK SSFHR+IP FMCQ           G+SIYG KF DENFV KHTGPG LSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  199 YKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.309e-39
Identity = 78/121 (64.46%), Postives = 89/121 (73.55%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   YKGS FHRVIP FMCQ           G+SIYG+KF DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  107 KGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.309e-39
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = -2
Query:   25 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 384
            K   YKGS FHR+IPGFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   44 KGFRYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.710e-39
Identity = 80/122 (65.57%), Postives = 87/122 (71.31%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            G  L +KGS FHR+IP FM Q           GESIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:   68 GVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.976e-39
Identity = 73/120 (60.83%), Postives = 88/120 (73.33%), Query Frame = -2
Query:   25 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 384
            K   YKGS FHR+IPGFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+C AKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   44 KGFRYKGSCFHRIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.488e-39
Identity = 76/111 (68.47%), Postives = 84/111 (75.68%), Query Frame = -2
Query:   52 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 384
            K   YKGS+FHRVIP FMCQ           G+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:   87 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.891e-38
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -2
Query:   25 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 384
            K   +KGSSFHR+IP FMCQ           G+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  180 KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.891e-38
Identity = 78/122 (63.93%), Postives = 86/122 (70.49%), Query Frame = -2
Query:   22 GKPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 387
            GKPL YKGS FHR+IP FM Q           GESIYG KFADENF  KHTGPG+LSMAN+G  TNGSQFF+ T  T WLDG+HVVFG+VV+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:   78 GKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.470e-38
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -2
Query:   25 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 384
            K   +KGSSFHR+IP FMCQ           G+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  180 KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CF834854 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.470e-38
Identity = 78/121 (64.46%), Postives = 89/121 (73.55%), Query Frame = -2
Query:   22 KPLPYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 384
            K   YKGS FHR+IPGFMCQ           G+SIYGSKF DENF  KH+ P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   42 KGFGYKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
The following BLAST results are available for this feature:
BLAST of CF834854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PPIE_RHIOR1.184e-4067.52Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_DROME1.309e-3964.46Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PAL4A_HUMAN1.309e-3961.67Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
CYP1_CAEEL1.710e-3965.57Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PAL4B_HUMAN4.976e-3960.83Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIF_BOVIN8.488e-3968.47Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_HUMAN1.891e-3860.83Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
CP19D_ARATH1.891e-3863.93Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIE_PONAB2.470e-3860.83Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIA_ECHGR2.470e-3864.46Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834854 ID=CF834854; Name=CF834854; organism=Citrus sinensis; type=EST; length=388bp
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGTGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGGGATCCGTTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCGTAGATTGATTCGCCTCCGGTTCC
GTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACAC
GGTGGAAGGACGAGCCTTTGTAGGGGAGAGGCTTGCCG
back to top