CF834862

Overview
NameCF834862
Unique NameCF834862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834862_ssr151 microsatellite CF834862_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2903 contig Csv1_Contig2903:643..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  180 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 77
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF834862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
UBIQ_MAIZE3.347e-11100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO3.347e-11100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL3.347e-11100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS3.347e-11100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU3.347e-11100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN3.347e-11100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_EUPEU3.347e-11100.00Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_ENCCU3.347e-1193.94Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DESAN3.347e-11100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA3.347e-11100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834862 ID=CF834862; Name=CF834862; organism=Citrus sinensis; type=EST; length=278bp
TAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAACA
GAGTTCAACTACCACAAACCAAAATAAACTTCAAATAGTTATTTAAGCTA
TTTCACCAATAGCCAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGTCGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAA
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