CF834862

Overview
NameCF834862
Unique NameCF834862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834862_ssr151 microsatellite CF834862_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2903 contig Csv1_Contig2903:643..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF834862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
UBIQ_GORGO7.455e-1196.88Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_GEOCY7.455e-1196.88Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_FELCA7.455e-1196.88Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_EIMBO7.455e-1196.88Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_DROME7.455e-1196.88Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_DICDI7.455e-1196.88Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_CRYNE7.455e-1196.88Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CRIGR7.455e-1196.88Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_COPCO7.455e-1196.88Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHICK7.455e-1196.88Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834862 ID=CF834862; Name=CF834862; organism=Citrus sinensis; type=EST; length=278bp
TAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAACA
GAGTTCAACTACCACAAACCAAAATAAACTTCAAATAGTTATTTAAGCTA
TTTCACCAATAGCCAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGTCGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAA
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