CF834867

Overview
NameCF834867
Unique NameCF834867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834867 vs. ExPASy Swiss-Prot
Match: P5CR3_RAT (Pyrroline-5-carboxylate reductase 3 OS=Rattus norvegicus GN=Pycrl PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  137 LLGSGPAYIFXXXXXXXXXXXXXXLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAA 403
            L GSG A++               +P +LA  +A+QT+LG A M+ + GKHP QL+ DV +P GTTI G+H LE+ GFR   M+AV AA
Sbjct:  176 LSGSGVAFVCTFSEALAEGAIKMGMPSDLAHRIAAQTLLGTAKMLQQEGKHPAQLRTDVLTPAGTTIHGLHALEQGGFRAAAMSAVEAA 264          
BLAST of CF834867 vs. ExPASy Swiss-Prot
Match: P5CR3_MOUSE (Pyrroline-5-carboxylate reductase 3 OS=Mus musculus GN=Pycrl PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  137 LLGSGPAYIFXXXXXXXXXXXXXXLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAA 403
            L GSG A++               +P  LA  +A+QT+LG A M+ + GKHP QL+ DV +P GTTI G+H LE+ GFR   M+AV AA
Sbjct:  176 LSGSGVAFVCTFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKMLQQEGKHPAQLRTDVLTPAGTTIHGLHALERGGFRAATMSAVEAA 264          
BLAST of CF834867 vs. ExPASy Swiss-Prot
Match: P5CR_PSEAE (Pyrroline-5-carboxylate reductase OS=Pseudomonas aeruginosa GN=proC PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 9.183e-13
Identity = 35/88 (39.77%), Postives = 43/88 (48.86%), Query Frame = -3
Query:  134 GSGPAYIFXXXXXXXXXXXXXXLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAA 397
            GSGPAY F              L RE A  L  QT LGAA M   S   P +L+  V SP GTT A I   + +GF  ++  A+ AA+
Sbjct:  174 GSGPAYFFLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSFQANGFEALVEQALNAAS 261          

HSP 2 Score: 35.8094 bits (81), Expect = 9.183e-13
Identity = 18/57 (31.58%), Postives = 30/57 (52.63%), Query Frame = -2
Query:  414 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGL 581
            +R MPNTP+ + + A+ +      +    E  G+L  +VG  +W  DE   DA+T +
Sbjct:  116 VRCMPNTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAV 172          
BLAST of CF834867 vs. ExPASy Swiss-Prot
Match: P5CR3_BOVIN (Pyrroline-5-carboxylate reductase 3 OS=Bos taurus GN=PYCRL PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  137 LLGSGPAYIFXXXXXXXXXXXXXXLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAA 403
            L GSG A++               +P  LA  +A+QT+LG A ++ + G+HP QL+ DV +PGGTTI G+H LE+ G R   M+AV AA
Sbjct:  178 LSGSGVAFVCAFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKVLLQKGQHPAQLRTDVCTPGGTTIYGLHVLEQGGLRATAMSAVEAA 266          
BLAST of CF834867 vs. ExPASy Swiss-Prot
Match: P5CR_CAEEL (Putative pyrroline-5-carboxylate reductase OS=Caenorhabditis elegans GN=F55G1.9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 45/95 (47.37%), Postives = 52/95 (54.74%), Query Frame = -3
Query:  134 GSGPAYIFXXXXXXXXXXXXXXLPRELALGLASQTVLGAASMVTKSG-------KHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAA 397
            GS PA+ F              L R  A  LA+Q VLGAA MV  S        +H G LKD V SPGGTTI G+  LEK+GFR  +M AVVAA+
Sbjct:  193 GSSPAWTFMYIESLADGAVAQGLGRAEAKRLAAQAVLGAAQMVLNSNSGFDIETQHFGSLKDMVCSPGGTTIEGVRALEKNGFRYAVMEAVVAAS 287          
The following BLAST results are available for this feature:
BLAST of CF834867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
P5CR3_RAT5.898e-1444.94Pyrroline-5-carboxylate reductase 3 OS=Rattus norv... [more]
P5CR3_MOUSE1.314e-1344.94Pyrroline-5-carboxylate reductase 3 OS=Mus musculu... [more]
P5CR_PSEAE9.183e-1339.77Pyrroline-5-carboxylate reductase OS=Pseudomonas a... [more]
P5CR3_BOVIN1.453e-1242.70Pyrroline-5-carboxylate reductase 3 OS=Bos taurus ... [more]
P5CR_CAEEL1.606e-1147.37Putative pyrroline-5-carboxylate reductase OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834867 ID=CF834867; Name=CF834867; organism=Citrus sinensis; type=EST; length=594bp
ATGCAACTGCCCCTTTCAATATCCATACAGAAAACAAAAAAAAGGAGAGG
GTTAATCGCCATACTAGAAGTGGAAGAGCTGAGAAACCGGAATCAAAATG
AATTAGCTCTAGGACAGTTCTCGGCTTCGCGTGAGCAGCAGCAACAACAG
CATTCATTAATATCCCACGAAATCCACTTTTCTCCAACTCATGAATACCA
GCAATAGTAGTCCCACCAGGCGATGCAACATCATCTTTTAGCTGACCAGG
ATGCTTCCCACTTTTAGTGACCATTGATGCTGCTCCTAATACTGTCTGAG
AAGCTAGACCAAGTGCAAGTTCTCGCGGTAGCCCTGCAGCCACAGCTGCA
TCAGCCAAAGCTTCAATTGCTAAAAATATATATGCTGGACCGCTGCCAAG
AAGCCACATACCTCAGGCCCGTGATTGCATCAAACAATTTCTCATCCGCT
CGCCATATCTTGCCAACTGATCCGAATAATTTACCGATTAGTTCCCCATC
CTCTTCTGTTGCAGTCCCTCCCAAGCTCATAACTGTTGCAGCCTCACCTA
CAGCAGAAGGTGTATTAGGCATAACTCTAATAAACCGGCTGTGA
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