CF834868

Overview
NameCF834868
Unique NameCF834868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2387 contig Csv1_Contig2387:233..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR3_HUMAN (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-30
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  426 LLGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            L GSG A++    EALA+G V  G+P  LA  +A+QT+LG A M+   G+HP QL+ DV +PGGTTI G+H LE+ G R   M+AV AA  R++ELS
Sbjct:  176 LSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELS 272          

HSP 2 Score: 53.9138 bits (128), Expect = 2.347e-30
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  149 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            ++ P+++ + +LVSVAAGV L  L+E    ++R +RV+PN P  V E A VM+ G      +  L+  L  + G+     E   D  TGL
Sbjct:   87 EVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETNLLQHLLEACGRCEEVPEAYVDIHTGL 176          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR3_BOVIN (Pyrroline-5-carboxylate reductase 3 OS=Bos taurus GN=PYCRL PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.280e-29
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  426 LLGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            L GSG A++    EALA+G +  G+P  LA  +A+QT+LG A ++ + G+HP QL+ DV +PGGTTI G+H LE+ G R   M+AV AA  R+RELS
Sbjct:  178 LSGSGVAFVCAFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKVLLQKGQHPAQLRTDVCTPGGTTIYGLHVLEQGGLRATAMSAVEAATCRARELS 274          

HSP 2 Score: 51.6026 bits (122), Expect = 3.280e-29
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 2
Query:  146 MQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            +++ P ++ + +LVSVAAGV L  L++     +R +RV PN P  V E A VM+ G  A   + +L+  L  + G+     E   D  TGL
Sbjct:   88 VEVAPAVTAEHILVSVAAGVSLSTLEKLLPPMARVLRVSPNLPCIVQEGAMVMARGCCAGSYEAQLLRSLLEACGQCEEVPEAQVDVHTGL 178          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_SHIFL (Pyrroline-5-carboxylate reductase OS=Shigella flexneri GN=proC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.258e-29
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  432 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            GS PAY+F+ IEA+AD  V  G+PR  A   A+Q V+G+A MV ++G+HPG LKD V SPGGTTI  +  LE+ GFR  ++ A+    ++S +LS
Sbjct:  173 GSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLS 267          

HSP 2 Score: 48.521 bits (114), Expect = 7.258e-29
Identity = 30/90 (33.33%), Postives = 44/90 (48.89%), Query Frame = 2
Query:  149 QIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            +I   L++  L+VS+AAGV L  L    GH R  IR MPNTP+ V    T ++     T ED   +  +F   G+     E +   + G+
Sbjct:   82 EITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGV 171          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_ECOLI (Pyrroline-5-carboxylate reductase OS=Escherichia coli (strain K12) GN=proC PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.258e-29
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  432 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            GS PAY+F+ IEA+AD  V  G+PR  A   A+Q V+G+A MV ++G+HPG LKD V SPGGTTI  +  LE+ GFR  ++ A+    ++S +LS
Sbjct:  173 GSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLS 267          

HSP 2 Score: 48.521 bits (114), Expect = 7.258e-29
Identity = 30/90 (33.33%), Postives = 44/90 (48.89%), Query Frame = 2
Query:  149 QIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            +I   L++  L+VS+AAGV L  L    GH R  IR MPNTP+ V    T ++     T ED   +  +F   G+     E +   + G+
Sbjct:   82 EITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGV 171          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR3_XENLA (Pyrroline-5-carboxylate reductase 3 OS=Xenopus laevis GN=pycrl PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 9.448e-29
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  432 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 713
            GSG AY++   EALADG V  G+P  LA  + +QT+LGA  M+ +S +HP  L+ DV +PGGTTI G+HELEK G R  +MNAV AA  R+ ++
Sbjct:  178 GSGVAYVYTFAEALADGAVKMGMPSALARQIVAQTLLGAGKMLLQSEEHPASLRADVCTPGGTTIFGLHELEKGGLRAAVMNAVEAATTRAMDM 271          

HSP 2 Score: 46.2098 bits (108), Expect = 9.448e-29
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 2
Query:  149 QIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            +I P ++   L++S+AAGV L+ L++     S+ IR+MPN P  + E A V S G  A E + ++   L  + G      +   D  TG+
Sbjct:   87 EIYPKVTADHLIISMAAGVTLETLEKNLPPGSKVIRMMPNLPCVLQEGAIVFSRGRCAGEVEADVFESLVRTCGLCVEVPQSCIDIHTGV 176          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR1_BACSU (Pyrroline-5-carboxylate reductase 1 OS=Bacillus subtilis GN=proH PE=3 SV=5)

HSP 1 Score: 89.7373 bits (221), Expect = 1.844e-26
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  426 LLGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            + GSGPAY +  +E +   G  AGL ++L+  + +QT+LGAA M+ ++G+HP  L+D++ SP GTT AG+  L+KSG    +  A+  AAKRS+E+S
Sbjct:  186 IAGSGPAYFYYLMEFIEKTGEEAGLDKQLSRSIGAQTLLGAAKMLMETGEHPEILRDNITSPNGTTAAGLQALKKSGGGEAISQAIKHAAKRSKEIS 282          

HSP 2 Score: 50.447 bits (119), Expect = 1.844e-26
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 2
Query:  176 KLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            +L++SV AG+    + Q        +RVMPNT S +G +AT ++LG   +E+  +L   L G +G+++   E   D  TG+
Sbjct:  106 QLILSVLAGITTSFIEQSLLNEQPVVRVMPNTSSMIGASATAIALGKYVSEDLKKLAEALLGCMGEVYTIQENQMDIFTGI 186          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_CORML (Pyrroline-5-carboxylate reductase OS=Corynebacterium melassecola GN=proC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.847e-26
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  432 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 713
            GS PAY+FL  EAL + GV  GLPR  A  LA  +  GAA+M+ ++GK P +L+  V+SP GTT+A I ELE+SG RG    A  A A RS EL
Sbjct:  174 GSSPAYLFLVTEALIEAGVNLGLPRATAKKLAVASFEGAATMMKETGKEPSELRAGVSSPAGTTVAAIRELEESGIRGAFYRAAQACADRSEEL 267          

HSP 2 Score: 46.595 bits (109), Expect = 1.847e-26
Identity = 26/84 (30.95%), Postives = 44/84 (52.38%), Query Frame = 2
Query:  167 SRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            S + ++VS+AAG+ +  ++E        +RVMPNTP  VG+  + ++ G     E  E +  L  +VG +    E   DA+T +
Sbjct:   89 SAQSVVVSMAAGISIAAMEESASAGLPVVRVMPNTPMLVGKGMSTVTKGRYVDAEQLEQVKDLLSTVGDVLEVAESDIDAVTAM 172          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_CORGL (Pyrroline-5-carboxylate reductase OS=Corynebacterium glutamicum GN=proC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.847e-26
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  432 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 713
            GS PAY+FL  EAL + GV  GLPR  A  LA  +  GAA+M+ ++GK P +L+  V+SP GTT+A I ELE+SG RG    A  A A RS EL
Sbjct:  174 GSSPAYLFLVTEALIEAGVNLGLPRATAKKLAVASFEGAATMMKETGKEPSELRAGVSSPAGTTVAAIRELEESGIRGAFYRAAQACADRSEEL 267          

HSP 2 Score: 46.595 bits (109), Expect = 1.847e-26
Identity = 26/84 (30.95%), Postives = 44/84 (52.38%), Query Frame = 2
Query:  167 SRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            S + ++VS+AAG+ +  ++E        +RVMPNTP  VG+  + ++ G     E  E +  L  +VG +    E   DA+T +
Sbjct:   89 SAQSVVVSMAAGISIAAMEESASAGLPVVRVMPNTPMLVGKGMSTVTKGRYVDAEQLEQVKDLLSTVGDVLEVAESDIDAVTAM 172          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_PSEAE (Pyrroline-5-carboxylate reductase OS=Pseudomonas aeruginosa GN=proC PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.129e-26
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  432 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            GSGPAY FL ++A+ D G   GL RE A  L  QT LGAA M   S   P +L+  V SP GTT A I   + +GF  ++  A+ AA++RS EL+
Sbjct:  174 GSGPAYFFLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSFQANGFEALVEQALNAASQRSAELA 268          

HSP 2 Score: 56.6102 bits (135), Expect = 3.129e-26
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  152 IRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGL 415
            + P L  ++L+VS+AAG+    L+ W G  R  +R MPNTP+ + + A+ +      +    E  G+L  +VG  +W  DE   DA+T +
Sbjct:   83 LAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAV 172          
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_THET2 (Pyrroline-5-carboxylate reductase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=proC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.307e-26
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  435 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 713
            S PAY+ +  EALAD GV  G+PR LAL LA+  +     ++   G+HP Q+KD+VASPGGTTI G+H LE    R     AV AA +R  EL
Sbjct:  167 SAPAYLAVVAEALADAGVKMGMPRALALRLAADALAATGELL--KGRHPAQVKDEVASPGGTTIHGLHALEARAVRAAFYEAVEAATRRGHEL 257          

HSP 2 Score: 49.2914 bits (116), Expect = 5.307e-26
Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2
Query:  185 VSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATE-EDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            +S+ AG+    L     + R +R MPN    +GE++T ++    A E ED      LF +VG ++   E LFDA TG+
Sbjct:   87 ISIMAGISTSVLARRLDNRRVVRAMPNLAVVIGESSTALTALKEAREAEDLAFARALFATVGDVYEIPEHLFDAFTGM 164          
The following BLAST results are available for this feature:
BLAST of CF834868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
P5CR3_HUMAN2.347e-3051.55Pyrroline-5-carboxylate reductase 3 OS=Homo sapien... [more]
P5CR3_BOVIN3.280e-2950.52Pyrroline-5-carboxylate reductase 3 OS=Bos taurus ... [more]
P5CR_SHIFL7.258e-2949.47Pyrroline-5-carboxylate reductase OS=Shigella flex... [more]
P5CR_ECOLI7.258e-2949.47Pyrroline-5-carboxylate reductase OS=Escherichia c... [more]
P5CR3_XENLA9.448e-2952.13Pyrroline-5-carboxylate reductase 3 OS=Xenopus lae... [more]
P5CR1_BACSU1.844e-2644.33Pyrroline-5-carboxylate reductase 1 OS=Bacillus su... [more]
P5CR_CORML1.847e-2652.13Pyrroline-5-carboxylate reductase OS=Corynebacteri... [more]
P5CR_CORGL1.847e-2652.13Pyrroline-5-carboxylate reductase OS=Corynebacteri... [more]
P5CR_PSEAE3.129e-2646.32Pyrroline-5-carboxylate reductase OS=Pseudomonas a... [more]
P5CR_THET25.307e-2649.46Pyrroline-5-carboxylate reductase OS=Thermus therm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834868 ID=CF834868; Name=CF834868; organism=Citrus sinensis; type=EST; length=779bp
CTGCACCGCCGCCCTCTCTAATCTCAAACGCCGTGATGCTTTTGAGTCCA
TCGGCGTCAAAGTATTATCCGACAATAACGCCGTTGTTGAATACAGCGAT
GTGGTTGTTTTCTCTGTGAAACCGCAAGTAGTTAAAGATGTGGCCATGCA
GATAAGGCCGCTGTTATCACGGAAGAAGCTTTTGGTTTCTGTTGCTGCAG
GAGTGAAATTGAAAGACCTTCAGGAATGGACTGGTCACAGCCGGTTTATT
AGAGTTATGCCTAATACACCTTCTGCTGTAGGTGAGGCTGCAACAGTTAT
GAGCTTGGGAGGAACTGCAACAGAAGAGGATGGGGAACTAATCGGTAAAT
TATTCGGATCAGTTGGCAAGATATGGCGAGCGGATGAGAAATTGTTTGAT
GCAATCACGGGCCTGAGGTATGTGGCTTCTTGGCAGCGGTCCAGCATATA
TATTTTTAGCAATTGAAGCTTTGGCTGATGGAGGTGTGGCTGCAGGGCTA
CCGCGAGAACTTGCACTTGGTCTAGCTTCTCAGACAGTATTAGGAGCAGC
ATCAATGGTCACTAAAAGTGGGAAGCATCCTGGTCAGCTAAAAGATGATG
TTGCATCGCCTGGTGGGACTACTATTGCTGGTATTCATGAGTTGGAGAAA
AGTGGATTTCGTGGGATATTAATGAATGCTGTTGTTGCTGCTGCTAAGCG
AAGCCGAGAACTGTCCTAGAGCTAATTCATTTTGATTCCAGTTTCTCAGC
TCTTACACTTCTAGTATGGCGATTAAACC
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