CF834868

Overview
NameCF834868
Unique NameCF834868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2387 contig Csv1_Contig2387:233..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_STAAC (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain COL) GN=proC PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.103e-13
Identity = 31/97 (31.96%), Postives = 48/97 (49.48%), Query Frame = 3 
Query:  426 LLGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            + GSGPA+++   E     G   GL +E         ++G + M+ +S     QL+ ++ S GGTT AG+  L +     I  + + AA  RS ELS
Sbjct:  170 ITGSGPAFLYHVFEQYVKAGTKLGLEKEQVEESIRNLIIGTSKMIERSDLSMAQLRKNITSKGGTTQAGLDTLSQYDLVSIFEDCLNAAVDRSIELS 266

HSP 2 Score: 37.7354 bits (86), Expect = 9.103e-13
Identity = 27/95 (28.42%), Postives = 49/95 (51.58%), Query Frame = 2 
Query:  143 AMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGT----ATEEDGELIGKLFGSVGKIWRADEKLFDAITG 412
            A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S        + +E  +L+ K FGSV ++         AITG
Sbjct:   79 ATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLV-KAFGSVIEVSEDHLHQVTAITG 172
[Close]
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_STAES (Pyrroline-5-carboxylate reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=proC PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.590e-12
Identity = 30/97 (30.93%), Postives = 47/97 (48.45%), Query Frame = 3 
Query:  426 LLGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            + GSGPA+++   E     G   GL R          ++G + M+ +S     QL+ ++ S GGTT AG+  L +     +  + + AA  RS ELS
Sbjct:  170 ITGSGPAFLYHVFEQYVKAGTELGLERNQVEESIRNLIIGTSKMIERSDLSMSQLRKNITSKGGTTQAGLDALSQYDIVSMFEDCLGAAVNRSMELS 266

HSP 2 Score: 36.965 bits (84), Expect = 2.590e-12
Identity = 25/125 (20.00%), Postives = 50/125 (40.00%), Query Frame = 2 
Query:   44 ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            E +GV    D+ A                    A +IR  ++     +S+ AG+ +  + Q+   ++   R+MPNT + VG + T +S       +    + +L  + G +    E+    +T +
Sbjct:   46 EKLGVNYSYDDEALLKDADYVFLGTKPHDFENLANRIREHITNDNRFISIMAGLSIDYIRQQLNTNNPLARIMPNTNAQVGHSVTGISFSNNFDPKSKNEVDELINAFGSVIEVSEEHLHQVTAI 170
[Close]
BLAST of CF834868 vs. ExPASy Swiss-Prot
Match: P5CR_STAEQ (Pyrroline-5-carboxylate reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=proC PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.590e-12
Identity = 30/97 (30.93%), Postives = 47/97 (48.45%), Query Frame = 3 
Query:  426 LLGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 716
            + GSGPA+++   E     G   GL R          ++G + M+ +S     QL+ ++ S GGTT AG+  L +     +  + + AA  RS ELS
Sbjct:  170 ITGSGPAFLYHVFEQYVKAGTELGLERNQVEESIRNLIIGTSKMIERSDLSMSQLRKNITSKGGTTQAGLDALSQYDIVSMFEDCLGAAVNRSMELS 266

HSP 2 Score: 36.965 bits (84), Expect = 2.590e-12
Identity = 25/125 (20.00%), Postives = 50/125 (40.00%), Query Frame = 2 
Query:   44 ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGL 415
            E +GV    D+ A                    A +IR  ++     +S+ AG+ +  + Q+   ++   R+MPNT + VG + T +S       +    + +L  + G +    E+    +T +
Sbjct:   46 EKLGVNYSYDDEALLKDADYVFLGTKPHDFENLANRIREHITNDNRFISIMAGLSIDYIRQQLNTNNPLARIMPNTNAQVGHSVTGISFSNNFDPKSKNEVDELINAFGSVIEVSEEHLHQVTAI 170
The following BLAST results are available for this feature:
BLAST of CF834868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
P5CR_STAAC9.103e-1331.96Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAES2.590e-1230.93Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAEQ2.590e-1230.93Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834868 ID=CF834868; Name=CF834868; organism=Citrus sinensis; type=EST; length=779bp
CTGCACCGCCGCCCTCTCTAATCTCAAACGCCGTGATGCTTTTGAGTCCA
TCGGCGTCAAAGTATTATCCGACAATAACGCCGTTGTTGAATACAGCGAT
GTGGTTGTTTTCTCTGTGAAACCGCAAGTAGTTAAAGATGTGGCCATGCA
GATAAGGCCGCTGTTATCACGGAAGAAGCTTTTGGTTTCTGTTGCTGCAG
GAGTGAAATTGAAAGACCTTCAGGAATGGACTGGTCACAGCCGGTTTATT
AGAGTTATGCCTAATACACCTTCTGCTGTAGGTGAGGCTGCAACAGTTAT
GAGCTTGGGAGGAACTGCAACAGAAGAGGATGGGGAACTAATCGGTAAAT
TATTCGGATCAGTTGGCAAGATATGGCGAGCGGATGAGAAATTGTTTGAT
GCAATCACGGGCCTGAGGTATGTGGCTTCTTGGCAGCGGTCCAGCATATA
TATTTTTAGCAATTGAAGCTTTGGCTGATGGAGGTGTGGCTGCAGGGCTA
CCGCGAGAACTTGCACTTGGTCTAGCTTCTCAGACAGTATTAGGAGCAGC
ATCAATGGTCACTAAAAGTGGGAAGCATCCTGGTCAGCTAAAAGATGATG
TTGCATCGCCTGGTGGGACTACTATTGCTGGTATTCATGAGTTGGAGAAA
AGTGGATTTCGTGGGATATTAATGAATGCTGTTGTTGCTGCTGCTAAGCG
AAGCCGAGAACTGTCCTAGAGCTAATTCATTTTGATTCCAGTTTCTCAGC
TCTTACACTTCTAGTATGGCGATTAAACC
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