CF834870

Overview
NameCF834870
Unique NameCF834870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5463 contig Csv1_Contig5463:217..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 72/202 (35.64%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            F H DVT E     AVD    +   LD +VNNAGI       +++    E++++F+INV+ VF G +     M    KG I+++ S+ G +G  G  AY  SK AV    K  A DL  + IRVN V P  +AT       P  ++  DA    R  +     + G      +V+ AVLFL  DEA ++ G+ L+VDGG+T+
Sbjct:   59 FLHLDVTNENHWTGAVDTILAESDRLDALVNNAGI--LTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIAT-------PMTQQILDAPQSARALL--GPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYTA 249          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 72/202 (35.64%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            F H DVT E     AVD    +   LD +VNNAGI       +++    E++++F+INV+ VF G +     M    KG I+++ S+ G +G  G  AY  SK AV    K  A DL  + IRVN V P  +AT       P  ++  DA    R  +     + G      +V+ AVLFL  DEA ++ G+ L+VDGG+T+
Sbjct:   59 FLHLDVTNENHWTGAVDTILAESDRLDALVNNAGI--LTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIAT-------PMTQQILDAPQSARALL--GPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYTA 249          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 68/208 (32.69%), Postives = 116/208 (55.77%), Query Frame = 1
Query:    1 LGGEPDTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANM-QGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            LGG+       CDVT+ +DV   +    E+FG LD+MVNNAGI+      +R     +F++V  +++KG ++G + AA IM  + +G I+++ SV+G +G +G   Y+ +K  ++G+ K  A +L   GIRVN ++P  + + +  A +P+           R +  + A +  G     ++VA+  +FLA D + Y++GT L V GG
Sbjct:   51 LGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRD--ATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEA-MPQ-----------RIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 68/208 (32.69%), Postives = 116/208 (55.77%), Query Frame = 1
Query:    1 LGGEPDTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANM-QGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            LGG+       CDVT+ +DV   +    E+FG LD+MVNNAGI+      +R     +F++V  +++KG ++G + AA IM  + +G I+++ SV+G +G +G   Y+ +K  ++G+ K  A +L   GIRVN ++P  + + +  A +P+           R +  + A +  G     ++VA+  +FLA D + Y++GT L V GG
Sbjct:   51 LGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRD--ATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEA-MPQ-----------RIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 68/200 (34.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGF 624
            F    +T E      +    E+FGT+DI+VNNAGI       + +   ++++ + D+N+   F     AA+IMIPQ  G II+ICS+   +GG    AY+ +KHA+ G  K    +LG+Y I+VN ++P   AT + LA     E  +      R      AN  G      D+  A +FLA   + Y++G  L+VDGG+
Sbjct:   70 FMQVGITAEGAPQKIIAACCERFGTVDILVNNAGI--CKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQ------RVLDHIPANRWG---DTQDLMGAAVFLASPASNYVNGHLLVVDGGY 258          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 77/211 (36.49%), Postives = 111/211 (52.61%), Query Frame = 1
Query:    1 LGGEPDTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTSV 633
            +GGE    F   DV K+ +    V  T E FG LDI+VNNAGI   P  +I E    +F+K   +NVKG F   K+A   M  Q  G I+++ S AG IG      Y+ SK A+LGL +++A D   YGIRVN V P    +   +A +      E+ +    + +       G E    ++A A+LF A DEA +++G+ + +DGG T+V
Sbjct:   52 MGGE--AAFIFGDVAKDAE--QIVKKTVETFGRLDILVNNAGI--VPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQSEGLMARVKASPNPEELLKKMTSRIP--MKRLGKE---EEIAFAILFAACDEAGFMTGSIINIDGGSTAV 251          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 68/205 (33.17%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   16 DTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALA---HLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            D+F    +V   ++V + +     +FG+LD++VNNAGI+      +      E++ V D N+KGVF+ ++ A   M+ Q  G II++ SV GA+G  G   Y  +K  V+GL K+ A +L   GI VN V+P  + + +  A    L E+  T+  +  F                  D+AN V FLA D+A+YI+G  + V+GG
Sbjct:   55 DSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL--LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQ--------------DTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 68/205 (33.17%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   16 DTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALA---HLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            D+F    +V   ++V + +     +FG+LD++VNNAGI+      +      E++ V D N+KGVF+ ++ A   M+ Q  G II++ SV GA+G  G   Y  +K  V+GL K+ A +L   GI VN V+P  + + +  A    L E+  T+  +  F                  D+AN V FLA D+A+YI+G  + V+GG
Sbjct:   55 DSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL--LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQ--------------DTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 68/205 (33.17%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   16 DTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALA---HLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            D+F    +V   ++V + +     +FG+LD++VNNAGI+      +      E++ V D N+KGVF+ ++ A   M+ Q  G II++ SV GA+G  G   Y  +K  V+GL K+ A +L   GI VN V+P  + + +  A    L E+  T+  +  F                  D+AN V FLA D+A+YI+G  + V+GG
Sbjct:   55 DSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL--LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQ--------------DTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 68/205 (33.17%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   16 DTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALA---HLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            D+F    +V   ++V + +     +FG+LD++VNNAGI+      +      E++ V D N+KGVF+ ++ A   M+ Q  G II++ SV GA+G  G   Y  +K  V+GL K+ A +L   GI VN V+P  + + +  A    L E+  T+  +  F                  D+AN V FLA D+A+YI+G  + V+GG
Sbjct:   55 DSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL--LMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQ--------------DTDIANTVAFLASDKAKYITGQTIHVNGG 243          
The following BLAST results are available for this feature:
BLAST of CF834870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
CPNA_COMTE2.679e-2435.64Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS92.679e-2435.64Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
Y1385_MYCBO3.868e-2332.69Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU3.868e-2332.69Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
YGCW_ECOLI1.126e-2234.00Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
Y325_THEMA1.126e-2236.49Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
FABG_STAAW1.126e-2233.173-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS1.126e-2233.173-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR1.126e-2233.173-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN1.126e-2233.173-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834870 ID=CF834870; Name=CF834870; organism=Citrus sinensis; type=EST; length=765bp
CTTGGTGGTGAGCCAGACACTTTTTTTTGCCATTGTGATGTCACAAAGGA
GGAAGATGTTTGCTCTGCTGTTGACCTCACAGACGAAAAATTTGGCACAC
TTGATATCATGGTCAATAATGCTGGCATTTCAGGGGCTCCTTGTCCTGAC
ATCCGTGAGGCGGACTTATCAGAGTTTGAGAAGGTATTTGACATAAATGT
GAAGGGAGTTTTCCATGGAATGAAGCATGCAGCTCGGATCATGATCCCAC
AAACTAAAGGCACTATCATATCAATCTGCAGTGTTGCAGGTGCCATTGGT
GGTCTTGGCCCACATGCCTATACGGGGTCCAAGCATGCCGTTTTGGGACT
CAACAAGAATGTTGCCGCTGATCTTGGAAAATATGGCATCCGCGTGAACT
GTGTTTCTCCTTATGCTGTTGCAACAGGCTTGGCTTTGGCTCACTTGCCT
GAAGAGGAGAGGACAGAGGATGCCATGGTATGTTTCCGTAATTTTGTTGC
AAGAAATGCTAACATGCAGGGCACGGAGTTGACAGCTAATGATGTGGCTA
ACGCTGTTCTCTTCCTAGCAAGAGATGAAGCTAGGTACATAAGTGGAACG
AATCTGATGGTTGATGGGGGCTTCACATCTGTGAATCATTCACTTCGAGT
CTTTATATAAAATATTGGTTCCACGCCAATCAACAATTAGATGCATAAAA
GGTGATTGGAGCATTTGAGTTTCTTCGTTATTTCAGTTAGATACCTGCAA
TTGATTCCATATTTC
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