CF834870

Overview
NameCF834870
Unique NameCF834870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FOX2_NEUCR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Neurospora crassa GN=fox-2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   52 EDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEE 456
            ED  + V    + FG +DI+VNNAGI           D S ++ V +++ +G +   K A    + Q  G +++  S +G  G  G   Y+ +K A+LG ++ +A +  KY I VN ++P A  T +    LPEE
Sbjct:  371 EDGDAVVKAAIDAFGRVDIVVNNAGILRDKA--FHNMDDSLWDPVMNVHARGTYKVTKAAWPYFLKQKYGRVLNTTSTSGIYGNFGQANYSAAKCAILGFSRAIALEGAKYNIYVNTIAPNA-GTAMTKTILPEE 502          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: YQJQ_BACSU (Uncharacterized oxidoreductase yqjQ OS=Bacillus subtilis GN=yqjQ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVAT 426
            DV + ED+    D    + G++D+++NNAG        + ++ L + + +FD+NV G+    K     M+ Q KG II+I S AG I       Y+ +KHAVLG +  +  +L   GI V  V+P  + T
Sbjct:   64 DVGRLEDIARVRD----QIGSIDVLINNAGFG--IFETVLDSTLDDMKAMFDVNVFGLIACTKAVLPQMLEQKKGHIINIASQAGKIATPKSSLYSATKHAVLGYSNALRMELSGTGIYVTTVNPGPIQT 187          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: DCXR_HUMAN (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 50/178 (28.09%), Postives = 82/178 (46.07%), Query Frame = 1
Query:   94 GTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQ-TKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGF 624
            G +D++VNNA +  A      E     F++ F++N++ V    +  AR +I +   G I+++ S            Y  +K A+  L K +A +LG + IRVN V+P  V T +  A   +  + +  +         N    G       V NA+LFL  D +   +G+ L V+GGF
Sbjct:   75 GPVDLLVNNAAV--ALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTML---------NRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 59/203 (29.06%), Postives = 96/203 (47.29%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIG-GLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG--FTSVN 636
            DV + E + +AVD T + FG +DI++NNA      CP       + F+ V +I+  G F+  K           G+I++I +  G  G  L  HA   +K A   + +++A + G  G+RVN V+P  ++       L       +    F +   + A          ++A+AVLFLA   + Y++G+ L+ DGG   TS N
Sbjct:   93 DVRQPETILAAVDETLKTFGRVDILINNAA-GNFLCP-ATSLSFNAFKTVMEIDTMGTFNTSKVIYDKWFKDHGGSIVNISATLGYRGQALQVHA-GSAKAANDAMTRHLAVEWGPSGVRVNTVAPGPISGTEGYRRLGGSH--AETAGAFHSIPLQRAG------NKTEMAHAVLFLASRASSYVTGSVLVADGGAWLTSAN 284          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: DCXR_CAEEL (Probable L-xylulose reductase OS=Caenorhabditis elegans GN=dhs-21 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  109 MVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIP-QTKGTIISICSVAGAIGGLGPHA-YTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            +VNNAGI  A    I +      ++ F +NV+G     +  AR  +  Q KG+I++I S A AI  L  H  Y  SK A+  + + +A +LG   IRVN V+P  V T +   +  + ++ +  +   R  + R A +       ++V NAVLFL  D A   +G+ L VDGGF++
Sbjct:   87 LVNNAGI--ATNHAIGQITQQSIDRTFAVNVRGPILIAQLVARNFVDRQIKGSIVNISSQA-AIRPLDNHTVYCASKAALDMVTRCLANELGSQNIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLD--RMPIKRFAEV-------DEVVNAVLFLLSDNASMTTGSTLPVDGGFSN 250          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: SDH_AGRT5 (Serine 3-dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=sdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 48/180 (26.67%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGIS--GAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLA 570
            D+T E+    A+    + F  +DI+VNNAG++   AP P +    L +++ + D N+ G+ +   H    +I Q KG ++++ SVA     LG + Y G+K  +   +  + +DL   G+RV  + P    T   L      +   D           N       +TA+D+AN + ++A
Sbjct:   56 DITDEDATEKALAALPDGFRDIDILVNNAGLALGTAPAPQVA---LKDWQTMVDTNITGLLNITHHLLPTLIKQ-KGIVVNLSSVAAHYPYLGGNVYGGTKAFLRQFSLGLRSDLHGKGVRVTSIEPGMCETEFTLVRTGGNQEASD-----------NLYKGVNPITADDIANTIYWVA 220          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 57/200 (28.50%), Postives = 89/200 (44.50%), Query Frame = 1
Query:   52 EDVCSAVDLTD--------EKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQ-TKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGF 624
            E VC  VDL D           G +D++VNNA +  A      E     F+  F++N++ V    +  AR MI +   G I+++ S A          Y  +K A+  L K +A +LG + IRVN V+P  V T +   +  +  + +         V  +    G      +V +A+LFL    +   +G+ L VDGGF
Sbjct:   55 ETVC--VDLADWEATEQALSSVGPVDLLVNNAAV--ALLQPFLEVTKEAFDMSFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTSMGRTNWSDPHKAK---------VMLDRIPLGKFAEVENVVDAILFLLSHRSNMTTGSTLPVDGGF 241          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: PHBB_RHIME (Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN=phbB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 55/195 (28.21%), Postives = 92/195 (47.18%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            DV+  +     +   +   G +DI+VNNAGI+        +    ++ +V   N+ GVF+        M  +  G I++I S+ G  G +G   Y+ +K   LGL K +A +    GI VN + P  + T +  A +PE+   E  +      V R    +       +VA  V+FLA D+A +I+G+ +  +GG
Sbjct:   55 DVSSYQACVDGIARVEADLGPVDILVNNAGITRDAM--FHKMTPEQWGEVIGTNLTGVFNMTHPLWSGMRDRGFGRIVNISSINGQKGQMGQVNYSAAKAGDLGLTKALAQEGAAKGITVNAICPGYIGTEMVRA-VPEKVLNERIIPQIP--VGRLGEPE-------EVARCVVFLASDDAGFITGSTISANGG 237          
The following BLAST results are available for this feature:
BLAST of CF834870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
FOX2_NEUCR3.397e-1131.85Peroxisomal hydratase-dehydrogenase-epimerase OS=N... [more]
YQJQ_BACSU4.436e-1133.08Uncharacterized oxidoreductase yqjQ OS=Bacillus su... [more]
DCXR_HUMAN4.436e-1128.09L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
DECR2_DANRE5.794e-1129.06Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
DCXR_CAEEL5.794e-1133.52Probable L-xylulose reductase OS=Caenorhabditis el... [more]
SDH_AGRT57.567e-1126.67Serine 3-dehydrogenase OS=Agrobacterium tumefacien... [more]
DCXR_MESAU7.567e-1128.50L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
PHBB_RHIME9.883e-1128.21Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834870 ID=CF834870; Name=CF834870; organism=Citrus sinensis; type=EST; length=765bp
CTTGGTGGTGAGCCAGACACTTTTTTTTGCCATTGTGATGTCACAAAGGA
GGAAGATGTTTGCTCTGCTGTTGACCTCACAGACGAAAAATTTGGCACAC
TTGATATCATGGTCAATAATGCTGGCATTTCAGGGGCTCCTTGTCCTGAC
ATCCGTGAGGCGGACTTATCAGAGTTTGAGAAGGTATTTGACATAAATGT
GAAGGGAGTTTTCCATGGAATGAAGCATGCAGCTCGGATCATGATCCCAC
AAACTAAAGGCACTATCATATCAATCTGCAGTGTTGCAGGTGCCATTGGT
GGTCTTGGCCCACATGCCTATACGGGGTCCAAGCATGCCGTTTTGGGACT
CAACAAGAATGTTGCCGCTGATCTTGGAAAATATGGCATCCGCGTGAACT
GTGTTTCTCCTTATGCTGTTGCAACAGGCTTGGCTTTGGCTCACTTGCCT
GAAGAGGAGAGGACAGAGGATGCCATGGTATGTTTCCGTAATTTTGTTGC
AAGAAATGCTAACATGCAGGGCACGGAGTTGACAGCTAATGATGTGGCTA
ACGCTGTTCTCTTCCTAGCAAGAGATGAAGCTAGGTACATAAGTGGAACG
AATCTGATGGTTGATGGGGGCTTCACATCTGTGAATCATTCACTTCGAGT
CTTTATATAAAATATTGGTTCCACGCCAATCAACAATTAGATGCATAAAA
GGTGATTGGAGCATTTGAGTTTCTTCGTTATTTCAGTTAGATACCTGCAA
TTGATTCCATATTTC
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