CF834870

Overview
NameCF834870
Unique NameCF834870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5463 contig Csv1_Contig5463:217..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.574e-16
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   34 CDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            CDV+KE ++           G +D +VN+AGI       +      +   +  +N+ G     K A R MI Q  G I++I S+ G  G +G   Y  SK  ++G +K++A ++ K  IRVN V+P  + T + L  L E+  T+  MV    F               +VA +VLFL   E+ YI+G  L+VDGG
Sbjct:   54 CDVSKENEIQDTFKEITNNLGNVDYLVNSAGIRRDAL--LLRTRSEDIRSLLSVNLVGTIQTCKLALRSMIQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTLG-LEEDSLTK--MVPLGRFG-----------DPEEVAQSVLFLL--ESPYITGHVLVVDGG 231          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_VIBHA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio harveyi GN=fabG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 60/200 (30.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTEL-TANDVANAVLFLARDEARYISGTNLMVDGGFTSV 633
            +VT  E + + +   +++ G +DI+VNNAGI+        + D  E+  + + N+  ++   K   R M+ +  G II++ SV G +G  G   Y  +K  V+G  K++A ++   G+ VN V+P  + T +  A L +++R            A  +N+    L    ++A+AV+FLA  EA YI+G  L V+GG   V
Sbjct:   59 NVTDVESIEATLKTINDECGAIDILVNNAGITRDNLLMRMKDD--EWNDIINTNLTPIYRMSKAVLRGMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKA-LNDDQR-----------AATLSNVPAGRLGDPREIASAVVFLASPEAAYITGETLHVNGGMYMV 244          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 69/208 (33.17%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   34 CDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISG-APCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTK----GTIISICSVAGAIGGL---GPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELT----ANDVANAVLFLARDEARYISGTNLMVDGG 621
            CDV       SA D     FG  +I++NNAGI+      DI +AD   ++++  +N+ GV +     +++ IP  +    G+I  + SV+   GG    GPH Y+ +K  VLGL K +A + G   IRVNCV+P  + T +    L  E R +               ++G  L+    A DVAN  LFLA D + Y++G  + V+GG
Sbjct:   64 CDVADRASCTSASDEVLSAFGVANILINNAGITQPVKTLDISDAD---WQRIVAVNMTGVLN----LSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGPH-YSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDITGDKLSAEMRAD--------------IVKGIPLSRLGDARDVANIYLFLASDLSAYVTGAVIDVNGG 249          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: SORD_KLEPN (Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella pneumoniae GN=sorD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 68/217 (31.34%), Postives = 106/217 (48.85%), Query Frame = 1
Query:   25 FCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGIS------GAPCPDIR-EADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAV-ATGLALAHLPEEERTEDAMVCFRNFV--------ARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFT 627
            F   D++   +V   +D   +++  +D +VNNAG++          P  R E + + FEK+ +IN KGVF   +  AR M+ Q  G I+++ S +G  G  G   Y  +K A+    ++ + +LGKYGIRV  V+P  +  TGL     PE    E+A+   RN           +NA   G     ++VA+ V +L    A YI+G    + GG T
Sbjct:   55 FWSTDISSATEVQQTIDAIIQRWSRIDGLVNNAGVNFPRLLVDEKAPAGRYELNEAAFEKMVNINQKGVFFMSQAVARQMVKQRAGVIVNVSSESGLEGSEGQSCYAATKAALNSFTRSWSKELGKYGIRVVGVAPGILEKTGL---RTPE---YEEALAWTRNITVEQLREGYTKNAIPIGRAGKLSEVADFVCYLLSARASYITGVTTNIAGGKT 265          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 60/202 (29.70%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEK-----VFDINVKGVFHGMKHAARIMIPQTKG-TIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGF 624
            D+ K + + + +D    +FG +DI+VNNAG+       IR  D  EF +     V ++N+K VF   + AA+  I Q  G  II+I S+    GG+   +YT SK  V+G+ + +A +  K+ I VN ++P  +AT        +E+R+ + +         +    G     +D+   ++FLA   + Y++G  + VDGG+
Sbjct:   65 DLRKIDGIPALLDRAVAEFGHIDILVNNAGL-------IRREDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEIL---------DRIPAGRWGLPSDLMGPIVFLASSASDYVNGYTIAVDGGW 250          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:   37 DVTKEEDVC-SAVDLTDEKFGTLDIMVNNAGI-SGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTS 630
            D++K E +  SA +L + +   +DI+VNNAGI       D  E +   ++ V ++N+  +F   + A R M+ +  G II+I S+    GG+   AYT SKHAV GL K+ A +    GI+VN ++P  ++T        +E+R ED +              G    A+D+    +FLA   + Y++G  L VDGG+ S
Sbjct:   68 DMSKPEAIKDSAAELFENR--QIDILVNNAGIIHREKAEDFPEEN---WQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANTKPIRDDEKRNEDIL---------KRIPAGRWGQADDIGGTAVFLASRASDYVNGHILAVDGGWLS 253          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_RICBR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia bellii (strain RML369-C) GN=fabG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 67/200 (33.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:   34 CDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFTSV 633
            C++T  E+ CS +    EK   LDI+V NAGI+      IR  +  +F++V DIN+K  F   + A + M+    G II+I S+ G  G  G   Y  SK  ++G+ K++A ++   GI VN V+P     G   + + ++   E      R         +GT     D+ANAV FLA  ++ YI+G  L V+GG   V
Sbjct:   59 CNLTNTEE-CSNLVAQIEK---LDILVCNAGITKDTLA-IRMKN-EDFDQVIDINLKANFILNREAIKKMMTNRYGRIINITSIVGVSGNPGQANYCASKAGLIGMTKSLAYEVATRGITVNAVAP-----GFIKSDMTDKLNDEQKEAITRKIP------KGTYGMPEDIANAVAFLASKQSSYITGQTLHVNGGMLMV 241          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_MYCAV (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium avium GN=fabG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 70/207 (33.82%), Postives = 108/207 (52.17%), Query Frame = 1
Query:    7 GEPDTFF-CHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHA-YTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGG 621
            G PD  F   CDVT  + V  A    +E  G ++++V+NAGIS      IR  +   F +V + N+ G F   + AAR M  +  G II I SV+G + G+G  A Y  +K  ++G+ ++++ +L K G+  N V+P  + T +  A    +ER +   + F    A+         TA +V  AV FLA ++A YI+G  + VDGG
Sbjct:   58 GAPDGLFGVECDVTDNDAVDRAFTEVEEHQGPVEVLVSNAGISKDAFL-IRMTE-ERFTEVINANLTGAFRVTQRAARSMQKKRFGRIIYIGSVSG-MWGIGNQANYAAAKAGLIGMARSISRELSKAGVTANVVAPGYIDTEMTRA---LDERIQAGALEF--IPAKRVG------TAAEVPGAVSFLASEDASYIAGAVIPVDGG 250          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 67/207 (32.37%), Postives = 103/207 (49.76%), Query Frame = 1
Query:    4 GGEPDTFFCHCDVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLA-RDEARYISGTNLMVDGG 621
            GG+  TF    DV+K  DV + +    +K+GT+D++VNNAGI+      +     S++++V  +N+ GVF   + A +IM+ + +G II+I SV G IG +G   Y  +K  V+  +K  A +     I VN V P  +A+ +  A L E+   +                 G    A +VA  V FLA    A YI+G    +DGG
Sbjct:  125 GGQAITF--GGDVSKATDVDAMMKTALDKWGTIDVVVNNAGITRDTL--LIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMT-AELGEDMEKK----------ILGTIPLGRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGG 316          
BLAST of CF834870 vs. ExPASy Swiss-Prot
Match: BDH2_BOVIN (3-hydroxybutyrate dehydrogenase type 2 OS=Bos taurus GN=BDH2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 63/198 (31.82%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   37 DVTKEEDVCSAVDLTDEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHA-YTGSKHAVLGLNKNVAADLGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVCFRNFVARNANMQGTELTANDVANAVLFLARDEARYISGTNLMVDGGFT 627
            DVTK++ +    D        LD++ N AG        I + + ++++   ++NV+ ++  +K     M+ Q  G II++ SVA +I G+     Y+ +K AV+GL K+VAAD  + GIR NCV P  V T      +      E+A+    +F+ R     G   TA +VA   ++LA DE+ YI+G  +++DGG++
Sbjct:   58 DVTKKKQI----DQFANDIERLDVLFNVAGF--VHHGTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPEEAL---SDFLKRQKT--GRFATAEEVALLCVYLASDESAYITGNPVIIDGGWS 244          
The following BLAST results are available for this feature:
BLAST of CF834870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
CBR4_XENTR1.574e-1632.14Carbonyl reductase family member 4 OS=Xenopus trop... [more]
FABG_VIBHA2.056e-1630.003-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
Y4MP_RHISN2.685e-1633.17Uncharacterized short-chain type dehydrogenase/red... [more]
SORD_KLEPN2.685e-1631.34Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella... [more]
KDUD_ECOLI2.685e-1629.702-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
KDUD_BACSU2.685e-1632.502-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
FABG_RICBR2.685e-1633.503-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_MYCAV2.685e-1633.823-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_ARATH2.685e-1632.373-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
BDH2_BOVIN2.685e-1631.823-hydroxybutyrate dehydrogenase type 2 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834870 ID=CF834870; Name=CF834870; organism=Citrus sinensis; type=EST; length=765bp
CTTGGTGGTGAGCCAGACACTTTTTTTTGCCATTGTGATGTCACAAAGGA
GGAAGATGTTTGCTCTGCTGTTGACCTCACAGACGAAAAATTTGGCACAC
TTGATATCATGGTCAATAATGCTGGCATTTCAGGGGCTCCTTGTCCTGAC
ATCCGTGAGGCGGACTTATCAGAGTTTGAGAAGGTATTTGACATAAATGT
GAAGGGAGTTTTCCATGGAATGAAGCATGCAGCTCGGATCATGATCCCAC
AAACTAAAGGCACTATCATATCAATCTGCAGTGTTGCAGGTGCCATTGGT
GGTCTTGGCCCACATGCCTATACGGGGTCCAAGCATGCCGTTTTGGGACT
CAACAAGAATGTTGCCGCTGATCTTGGAAAATATGGCATCCGCGTGAACT
GTGTTTCTCCTTATGCTGTTGCAACAGGCTTGGCTTTGGCTCACTTGCCT
GAAGAGGAGAGGACAGAGGATGCCATGGTATGTTTCCGTAATTTTGTTGC
AAGAAATGCTAACATGCAGGGCACGGAGTTGACAGCTAATGATGTGGCTA
ACGCTGTTCTCTTCCTAGCAAGAGATGAAGCTAGGTACATAAGTGGAACG
AATCTGATGGTTGATGGGGGCTTCACATCTGTGAATCATTCACTTCGAGT
CTTTATATAAAATATTGGTTCCACGCCAATCAACAATTAGATGCATAAAA
GGTGATTGGAGCATTTGAGTTTCTTCGTTATTTCAGTTAGATACCTGCAA
TTGATTCCATATTTC
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