CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: OGDHL_PONAB (2-oxoglutarate dehydrogenase-like, mitochondrial OS=Pongo abelii GN=OGDHL PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.295e-35
Identity = 58/140 (41.43%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  151 TRIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD-IAICMVEQLCPFPYDLVQRELKRYP 567
            +++  CNW +VN +TPA+YFHVLRRQI   FRKPL + +PK+LLR  E K +  +             GT+F+R+I +    +   E + RLI C+GKVYY+L + R      + +AI  +EQ+ PFP+DL+++E ++YP
Sbjct:  806 SQLYDCNWIVVNCSTPANYFHVLRRQILLPFRKPLIIFTPKSLLRHPEAKFSFDQM----------VSGTSFQRVIPEDGAAARAPEQVRRLIFCTGKVYYDLVKERSSQGLEEKVAITRLEQISPFPFDLIKQEAEKYP 935          

HSP 2 Score: 55.8398 bits (133), Expect = 1.295e-35
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIP 128
            +R +G+V++LPHG +G GPEHSSAR ERFL MS+D+    P
Sbjct:  757 VRHNGIVLLLPHGMEGMGPEHSSARPERFLQMSNDDSDAYP 797          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_DICDI (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Dictyostelium discoideum GN=odhA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.734e-35
Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  160 QKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            Q+ N++ +N +TPA+YFH LRRQ+   +RKPL V  PK LLR   C S L+E             GT F+ ++ D +  ++    I R+I CSGKV+Y+L E RK  + +D+AI  +EQ+ PFPY  +Q E+ RY N
Sbjct:  708 QETNFYFINPSTPANYFHALRRQMIRNYRKPLIVAGPKVLLRHPNCFSTLNEM----------APGTHFQTVLSDPDTINNAST-IKRVIFCSGKVFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRIQEEINRYSN 833          

HSP 2 Score: 61.2326 bits (147), Expect = 3.734e-35
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            LRQSG+V++LPHG+DG GPEHSS R+ERFL +SD
Sbjct:  661 LRQSGIVILLPHGFDGAGPEHSSCRIERFLQLSD 694          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_CAEBR (2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG01737 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.371e-34
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKK-HSASDIAICMVEQLCPFPYDLVQRELKRY 564
            ++   NW + N TTPA+ +H+LRRQ+   FRKP  V SPK+LLR    +S + +F          + G+ F+R+I +    S     + RL+ C+GKVYY++   RK     +D+A+  VEQL PFPYDLVQ+E ++Y
Sbjct:  821 QLHDTNWIVANCTTPANIYHLLRRQVTMPFRKPAVVFSPKSLLRHPMARSPVEDF----------QSGSNFQRIIPETGAPSQNPPNVQRLVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKY 948          

HSP 2 Score: 58.9214 bits (141), Expect = 2.371e-34
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDN 113
            +RQSGLV++LPHGY+G GPEHSSAR ERFL M +++
Sbjct:  768 IRQSGLVMLLPHGYEGMGPEHSSARPERFLQMCNED 803          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_CAEEL (2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T22B11.5 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.884e-34
Identity = 55/138 (39.86%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  154 RIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKK-HSASDIAICMVEQLCPFPYDLVQRELKRY 564
            ++   NW + N TTPA+ +H+LRRQ+   FRKP  V SPK+LLR    +S + +F          + G+ F+R+I +    S     + R++ C+GKVYY++   RK     +D+A+  VEQL PFPYDLVQ+E ++Y
Sbjct:  823 QLHDTNWIVANCTTPANIYHLLRRQVTMPFRKPAVVFSPKSLLRHPMARSPVEDF----------QSGSNFQRVIPETGAPSQNPPDVKRVVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKY 950          

HSP 2 Score: 58.9214 bits (141), Expect = 8.884e-34
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDN 113
            +RQSGLV++LPHGY+G GPEHSSAR ERFL M +++
Sbjct:  770 IRQSGLVMLLPHGYEGMGPEHSSARPERFLQMCNED 805          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RICBR (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia bellii (strain RML369-C) GN=sucA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.535e-31
Identity = 59/132 (44.70%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N ++   TTPAS FH+LRRQI    RKPL VMSPK+LLR K   S L E              TTF  ++ + N        I ++ILCSGKVYY+L+E   + S S IAI  +EQL PF   +V   LK+Y
Sbjct:  737 NMYVTYPTTPASIFHLLRRQIIDNVRKPLIVMSPKSLLRHKNVVSKLDELG----------SNTTFLPVLDEVNKLE--ASNITKVILCSGKVYYDLFE--MRGSNSSIAIIRLEQLYPFEKKVVVELLKKY 854          

HSP 2 Score: 64.3142 bits (155), Expect = 8.535e-31
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHM-SDDNPYV 122
            LR SGLVV+LPHG++GQGPEHSSARLERFL + ++DN YV
Sbjct:  701 LRMSGLVVLLPHGFEGQGPEHSSARLERFLQLAAEDNMYV 740          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RICFE (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia felis GN=sucA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.452e-30
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N ++   TTPAS FH+LRRQI    RKPL +MSPK+LLR K   S L E            + TTF  ++ + N        I ++ILCSGKVYY+L+E R  +  S+IAI  +EQL PF   LV   LK+Y
Sbjct:  788 NMYVTYPTTPASIFHLLRRQILDDTRKPLIIMSPKSLLRHKYAVSKLDELG----------ENTTFLPVLDEVNKVD--TNNITKVILCSGKVYYDLFEMRGNN--SNIAIIRLEQLYPFEKKLVASLLKKY 905          

HSP 2 Score: 62.003 bits (149), Expect = 2.452e-30
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHM-SDDNPYV 122
            LR SGLVV+LPH ++GQGPEHSSARLERFL + ++DN YV
Sbjct:  752 LRMSGLVVLLPHAFEGQGPEHSSARLERFLQLAAEDNMYV 791          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_XENLA (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Xenopus laevis GN=dhtkd1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.453e-30
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKK--HSASDIAICMVEQLCPFPYDLVQRELKRYP 567
            N  +V+ TTPA YFH+LRRQ+   FRKPL V SPK LLR     S+L +             G TF+ +I    D S   + + ++ILCSGK YY L++ R+         AI  VE+LCPFP + +Q+E+ RYP
Sbjct:  741 NMFVVHPTTPAQYFHLLRRQMVRSFRKPLIVASPKMLLRYPAAVSSLEDI----------APGKTFRSVI---GDSSADPKSVSKVILCSGKHYYALHKQREALGEQGRSSAIIRVEELCPFPLEALQQEIHRYP 862          

HSP 2 Score: 59.3066 bits (142), Expect = 2.453e-30
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            L QSG+V++LPHGYDG GPEHSS R+ERFL M D
Sbjct:  696 LLQSGIVILLPHGYDGAGPEHSSCRIERFLQMCD 729          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_MOUSE (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Mus musculus GN=Dhtkd1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.051e-30
Identity = 60/137 (43.80%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*R-----KKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N  +V+ TTPA YFH+LRRQ+   FRKPL V SPK LLR     S L E             GT FK +I    D S   + +  LI CSGK +Y L + R     KKH   D AI  +E+LCPFP D +Q+E+ +Y
Sbjct:  734 NMFVVHPTTPAQYFHLLRRQMIRNFRKPLIVASPKMLLRYPAAVSTLEEM----------APGTAFKPVI---GDSSVDPKNVKTLIFCSGKHFYALLKQRESLGTKKH---DFAIIRLEELCPFPLDALQQEMSKY 854          

HSP 2 Score: 60.077 bits (144), Expect = 7.051e-30
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            L QSGLV++LPHGYDG GPEHSS R+ERFL M D
Sbjct:  689 LLQSGLVILLPHGYDGAGPEHSSCRIERFLQMCD 722          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_HUMAN (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Homo sapiens GN=DHTKD1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-29
Identity = 58/134 (43.28%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSAS--DIAICMVEQLCPFPYDLVQRELKRY 564
            N  +V+ TTPA YFH+LRRQ+   FRKPL V SPK LLR     S L E             GTTF  +I    D S   + +  L+ CSGK +Y L + R+   A   D AI  VE+LCPFP D +Q+E+ +Y
Sbjct:  733 NMFVVHPTTPAQYFHLLRRQMVRNFRKPLIVASPKMLLRLPAAVSTLQEM----------APGTTFNPVI---GDSSVDPKKVKTLVFCSGKHFYSLVKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKY 853          

HSP 2 Score: 58.151 bits (139), Expect = 2.026e-29
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            L QSG+V++LPHGYDG GP+HSS R+ERFL M D
Sbjct:  688 LLQSGIVILLPHGYDGAGPDHSSCRIERFLQMCD 721          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_RAT (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Rattus norvegicus GN=Dhtkd1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.638e-29
Identity = 58/134 (43.28%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSAS--DIAICMVEQLCPFPYDLVQRELKRY 564
            N  +V+ TTPA YFH+LRRQ+   FRKPL V SPK LLR     S L E             GT FK +I    D S   + +  LI CSGK +Y L + R+   A   D AI  +E+LCPFP D +Q+E+ +Y
Sbjct:  733 NMFVVHPTTPAQYFHLLRRQMMRNFRKPLIVASPKMLLRYPVAVSTLEEM----------APGTAFKPVI---GDSSVDPKNVKTLIFCSGKHFYALLKQRESLGAKKRDFAIIRLEELCPFPLDSLQQEMGKY 853          

HSP 2 Score: 58.9214 bits (141), Expect = 2.638e-29
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            L QSGLV++LPHGYDG GP+HSS R+ERFL M D
Sbjct:  688 LLQSGLVILLPHGYDGAGPDHSSCRIERFLQMCD 721          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
OGDHL_PONAB1.295e-3541.432-oxoglutarate dehydrogenase-like, mitochondrial O... [more]
DHTK1_DICDI3.734e-3542.34Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_CAEBR2.371e-3440.582-oxoglutarate dehydrogenase, mitochondrial OS=Cae... [more]
ODO1_CAEEL8.884e-3439.862-oxoglutarate dehydrogenase, mitochondrial OS=Cae... [more]
ODO1_RICBR8.535e-3144.702-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_RICFE2.452e-3044.702-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
DHTK1_XENLA2.453e-3042.22Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_MOUSE7.051e-3043.80Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_HUMAN2.026e-2943.28Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_RAT2.638e-2943.28Probable 2-oxoglutarate dehydrogenase E1 component... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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