CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RICCN (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia conorii GN=sucA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.434e-29
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N ++   TTPAS FH+LRRQI    RKPL VMSPK+LLR K   S L E            + TTF  ++ +          I ++ILCSGKVYY+L+E R  +  S+IAI  +EQL PF   LV   LK+Y
Sbjct:  739 NMYVTYPTTPASIFHLLRRQILDDTRKPLIVMSPKSLLRHKYAVSKLDELG----------ENTTFLPVLDEVTKVD--TNNITKVILCSGKVYYDLFEMRGNN--SNIAIIRLEQLYPFEKKLVASLLKKY 856          

HSP 2 Score: 60.077 bits (144), Expect = 3.434e-29
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDN 113
            LR SGLVV+LPH ++GQGPEHSSARLERFL ++ +N
Sbjct:  703 LRMSGLVVLLPHAFEGQGPEHSSARLERFLQLAAEN 738          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_DROME (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Drosophila melanogaster GN=CG1544 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.822e-29
Identity = 60/134 (44.78%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            N HIVN TTPA Y+HVLRRQ+   FRKPL V++PK LLR     S   +F          + GT F  ++    D     E + ++ILCSGK YY L E R+K  A D AI  +E LCPFP   +Q +L +Y N
Sbjct:  734 NVHIVNPTTPAQYYHVLRRQLARNFRKPLVVVAPKTLLRLPAATSTHEDF----------QPGTLFHNVL---GDTIAKPEQVRKVILCSGKHYYTLAEEREKRQAYDTAILRLESLCPFPIQELQAQLAQYGN 854          

HSP 2 Score: 47.3654 bits (111), Expect = 5.822e-29
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            +  + LV++LPHGYDG   EHSS R+ERFL + D
Sbjct:  689 MESNALVMLLPHGYDGAASEHSSCRIERFLQLCD 722          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RICTY (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia typhi GN=sucA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.672e-28
Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N +I   TTPAS FH+LRRQI    RKPL VMSPK+LLR K   S L E            + TTF  ++ +       +  I ++ILCSGKVYY+L+   K+   S+I I  +EQL PF   LV   LK+Y
Sbjct:  740 NMYITYPTTPASIFHLLRRQILESIRKPLIVMSPKSLLRHKYAVSKLDELG----------ENTTFIPVLDEVTKID--KNNITKVILCSGKVYYDLF--AKRVHNSNIVIIRLEQLYPFEKTLVASLLKKY 857          

HSP 2 Score: 60.077 bits (144), Expect = 1.672e-28
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHM-SDDNPYV 122
            LR SGLVV+LPH ++GQGPEHSSARLERFL + +++N Y+
Sbjct:  704 LRMSGLVVLLPHAFEGQGPEHSSARLERFLQLAAEENMYI 743          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_PONAB (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Pongo abelii GN=DHTKD1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.672e-28
Identity = 58/134 (43.28%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSAS--DIAICMVEQLCPFPYDLVQRELKRY 564
            N  +V+ TTPA YFH+LRRQ+   FRKPL V SPK LLR     S L E             GTTF  +I    D S   + +  L+ CSGK +Y L + R+   A   D AI  VE+LCPFP D +Q+E+ +Y
Sbjct:  733 NMFVVHPTTPAQYFHLLRRQMVRNFRKPLIVASPKMLLRLPAAVSTLQEM----------APGTTFNPVI---GDSSVDPKKVKTLVFCSGKHFYSLMKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKY 853          

HSP 2 Score: 55.0694 bits (131), Expect = 1.672e-28
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHMSD 107
            L QSG+V +LPHG+DG GP+HSS R+ERFL M D
Sbjct:  688 LLQSGIVTLLPHGHDGAGPDHSSCRIERFLQMCD 721          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RICPR (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia prowazekii GN=sucA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.802e-28
Identity = 57/132 (43.18%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N +I   TTPAS FH+LRRQI    RKPL VMSPK+LLR K   S L E            + TTF  ++ +          + ++ILCSGKVYY+L+  R  +  S+I I  +EQL PF   LV   LK+Y
Sbjct:  739 NMYITYPTTPASIFHLLRRQILESTRKPLIVMSPKSLLRHKYAVSKLDELG----------ENTTFIPILDEVTKID--TNNVTKVILCSGKVYYDLFAMRTNN--SNIVIIRLEQLYPFEKKLVASLLKKY 856          

HSP 2 Score: 60.077 bits (144), Expect = 4.802e-28
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 LRQSGLVVMLPHGYDGQGPEHSSARLERFLHM-SDDNPYV 122
            LR SGLVV+LPH ++GQGPEHSSARLERFL + +++N Y+
Sbjct:  703 LRMSGLVVLLPHAFEGQGPEHSSARLERFLQLAAEENMYI 742          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_ECOLI (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli (strain K12) GN=sucA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.795e-27
Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  +   +TPA  +H+LRRQ     R+PL VMSPK+LLR     S+L E  +            TF   I + ++     +G+ R+++CSGKVYY+L E R+K++  D+AI  +EQL PFP+  +Q  L+++
Sbjct:  732 ARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEIDELDP--KGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQF 863          

HSP 2 Score: 55.4546 bits (132), Expect = 1.795e-27
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            R  GLV++LPHGY+GQGPEHSSARLER+L +
Sbjct:  710 RMCGLVMLLPHGYEGQGPEHSSARLERYLQL 740          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_ECOL6 (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.795e-27
Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  +   +TPA  +H+LRRQ     R+PL VMSPK+LLR     S+L E  +            TF   I + ++     +G+ R+++CSGKVYY+L E R+K++  D+AI  +EQL PFP+  +Q  L+++
Sbjct:  732 ARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEIDELDP--KGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQF 863          

HSP 2 Score: 55.4546 bits (132), Expect = 1.795e-27
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            R  GLV++LPHGY+GQGPEHSSARLER+L +
Sbjct:  710 RMCGLVMLLPHGYEGQGPEHSSARLERYLQL 740          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_ECO57 (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.795e-27
Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  +   +TPA  +H+LRRQ     R+PL VMSPK+LLR     S+L E  +            TF   I + ++     +G+ R+++CSGKVYY+L E R+K++  D+AI  +EQL PFP+  +Q  L+++
Sbjct:  732 ARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEIDELDP--KGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQF 863          

HSP 2 Score: 55.4546 bits (132), Expect = 1.795e-27
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            R  GLV++LPHGY+GQGPEHSSARLER+L +
Sbjct:  710 RMCGLVMLLPHGYEGQGPEHSSARLERYLQL 740          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_GEOSW (2-oxoglutarate dehydrogenase E1 component OS=Geobacillus sp. (strain WCH70) GN=odhA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.479e-26
Identity = 52/138 (37.68%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD-IAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N++T A YFH+LRRQ     R   +PL +M+PK+LLR     S++ EF + Q HP  +++G    R            E + R+ILC+GK   +L E   K    D + I  VE+L PFP + +Q    RYPN
Sbjct:  757 NWTVANLSTAAQYFHILRRQAGILQREEVRPLVLMTPKSLLRHPLAASDVEEFTNGQFHPVIEQKGLGENR------------EKVERIILCTGKFAIDLAEQINKMEGLDWLHIVRVEELYPFPKEELQAIFARYPN 882          

HSP 2 Score: 60.077 bits (144), Expect = 1.479e-26
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSS RLERFL ++ +N + +  +
Sbjct:  722 QKSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAENNWTVANL 763          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIN (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans GN=sucA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.480e-26
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            A L+  +Q C   N  + N+TT A YFH+LRRQ+   +RKPL +++PK+LLR     ++LS  +D+        QG   + LI D     D  E   +++  +GKVYY+L + + ++   ++A+  VEQ+ PFP   +Q  LK + N
Sbjct:  720 ARLERFLQLCALDNMQVCNLTTAAQYFHLLRRQMLRNYRKPLVIVTPKSLLR---FPASLSPVEDI-------LQGAFREILIDDSGSKPDKIE---KVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKN 853          

HSP 2 Score: 57.3806 bits (137), Expect = 1.480e-26
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            R SGL+++LPHGY+GQGPEHSSARLERFL +
Sbjct:  698 RLSGLIMLLPHGYEGQGPEHSSARLERFLQL 728          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_RICCN3.434e-2944.702-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
DHTK1_DROME5.822e-2944.78Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_RICTY1.672e-2843.942-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
DHTK1_PONAB1.672e-2843.28Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_RICPR4.802e-2843.182-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_ECOLI1.795e-2737.242-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_ECOL61.795e-2737.242-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_ECO571.795e-2737.242-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_GEOSW1.479e-2637.682-oxoglutarate dehydrogenase E1 component OS=Geoba... [more]
ODO1_LEPIN1.480e-2635.372-oxoglutarate dehydrogenase E1 component OS=Lepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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