CF834875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIC (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=sucA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.480e-26 Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570 A L+ +Q C N + N+TT A YFH+LRRQ+ +RKPL +++PK+LLR ++LS +D+ QG + LI D D E +++ +GKVYY+L + + ++ ++A+ VEQ+ PFP +Q LK + N Sbjct: 720 ARLERFLQLCALDNMQVCNLTTAAQYFHLLRRQMLRNYRKPLVIVTPKSLLR---FPASLSPVEDI-------LQGAFREILIDDSGSKPDKIE---KVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKN 853 HSP 2 Score: 57.3806 bits (137), Expect = 1.480e-26 Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 3 Query: 9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101 R SGL+++LPHGY+GQGPEHSSARLERFL + Sbjct: 698 RLSGLIMLLPHGYEGQGPEHSSARLERFLQL 728
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_HAEIN (2-oxoglutarate dehydrogenase E1 component OS=Haemophilus influenzae GN=sucA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.926e-26 Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIK--DHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + +TPA +H+LRRQ R+PL +SPK+LLR S+L E + G TF+ +I D D D++ R+++CSGKVYY+L E R+ ++ D+AI +EQL PFP++ V++ L+ Y Sbjct: 735 ARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQSLRKMRRPLIAISPKSLLRHPLAVSSLDEL--ING---------TFQTVIGEIDELDPKDVK----RVVMCSGKVYYDLLEQRRANNQKDVAIIRIEQLYPFPHEDVKKALEPY 866 HSP 2 Score: 55.4546 bits (132), Expect = 1.926e-26 Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3 Query: 9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101 R GLV++LPHGY+GQGPEHSSARLER+L + Sbjct: 713 RMCGLVMLLPHGYEGQGPEHSSARLERYLQL 743
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_AZOVI (2-oxoglutarate dehydrogenase E1 component OS=Azotobacter vinelandii GN=sucA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.495e-25 Identity = 55/147 (37.41%), Postives = 74/147 (50.34%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570 A L+ +Q C N + TTPA +H+LRRQ+ RKPL ++PK+LLR K S L + HP + D D +E RL+LCSGKVYY+L + R DIAI +EQL PFP + + + Y N Sbjct: 740 ARLERYLQLCAEQNIQVCVPTTPAQVYHMLRRQVIRPLRKPLVALTPKSLLRHKSAISTLEDLALGSFHPVLPEV---------DSLDPKKVE----RLVLCSGKVYYDLLDKRHAEGREDIAIVRIEQLYPFPEEELAEVMAPYTN 873 HSP 2 Score: 52.373 bits (124), Expect = 3.495e-25 Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 3 Query: 18 GLVVMLPHGYDGQGPEHSSARLERFLHM 101 GL ++LPHGY+GQGPEHSSARLER+L + Sbjct: 721 GLTMLLPHGYEGQGPEHSSARLERYLQL 748
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUAB (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus GN=sucA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24 Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + R KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUA2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain 2308) GN=sucA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24 Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + R KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUA1 (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain S19) GN=sucA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24 Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + R KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_OCHA4 (2-oxoglutarate dehydrogenase E1 component OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24 Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + + KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 788 ARLERWLQMCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAVSTLNE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 929
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUSU (2-oxoglutarate dehydrogenase E1 component OS=Brucella suis GN=sucA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24 Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + + KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUSI (2-oxoglutarate dehydrogenase E1 component OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=sucA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24 Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + + KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUO2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24 Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564 A L+ +Q C N + NVTTPA+YFH+LRRQ+ FRKPL +M+PK+LLR K S L+E + G F + + KD + I R++LCSGKVYY+LYE R+K D+ + VEQL PFP + EL R+ Sbjct: 792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933 The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bpback to top |