CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIC (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=sucA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.480e-26
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            A L+  +Q C   N  + N+TT A YFH+LRRQ+   +RKPL +++PK+LLR     ++LS  +D+        QG   + LI D     D  E   +++  +GKVYY+L + + ++   ++A+  VEQ+ PFP   +Q  LK + N
Sbjct:  720 ARLERFLQLCALDNMQVCNLTTAAQYFHLLRRQMLRNYRKPLVIVTPKSLLR---FPASLSPVEDI-------LQGAFREILIDDSGSKPDKIE---KVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKN 853          

HSP 2 Score: 57.3806 bits (137), Expect = 1.480e-26
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            R SGL+++LPHGY+GQGPEHSSARLERFL +
Sbjct:  698 RLSGLIMLLPHGYEGQGPEHSSARLERFLQL 728          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_HAEIN (2-oxoglutarate dehydrogenase E1 component OS=Haemophilus influenzae GN=sucA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.926e-26
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIK--DHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  +   +TPA  +H+LRRQ     R+PL  +SPK+LLR     S+L E   + G         TF+ +I   D  D  D++    R+++CSGKVYY+L E R+ ++  D+AI  +EQL PFP++ V++ L+ Y
Sbjct:  735 ARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQSLRKMRRPLIAISPKSLLRHPLAVSSLDEL--ING---------TFQTVIGEIDELDPKDVK----RVVMCSGKVYYDLLEQRRANNQKDVAIIRIEQLYPFPHEDVKKALEPY 866          

HSP 2 Score: 55.4546 bits (132), Expect = 1.926e-26
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            R  GLV++LPHGY+GQGPEHSSARLER+L +
Sbjct:  713 RMCGLVMLLPHGYEGQGPEHSSARLERYLQL 743          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_AZOVI (2-oxoglutarate dehydrogenase E1 component OS=Azotobacter vinelandii GN=sucA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.495e-25
Identity = 55/147 (37.41%), Postives = 74/147 (50.34%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            A L+  +Q C   N  +   TTPA  +H+LRRQ+    RKPL  ++PK+LLR K   S L +      HP   +          D  D   +E    RL+LCSGKVYY+L + R      DIAI  +EQL PFP + +   +  Y N
Sbjct:  740 ARLERYLQLCAEQNIQVCVPTTPAQVYHMLRRQVIRPLRKPLVALTPKSLLRHKSAISTLEDLALGSFHPVLPEV---------DSLDPKKVE----RLVLCSGKVYYDLLDKRHAEGREDIAIVRIEQLYPFPEEELAEVMAPYTN 873          

HSP 2 Score: 52.373 bits (124), Expect = 3.495e-25
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 3
Query:   18 GLVVMLPHGYDGQGPEHSSARLERFLHM 101
            GL ++LPHGY+GQGPEHSSARLER+L +
Sbjct:  721 GLTMLLPHGYEGQGPEHSSARLERYLQL 748          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUAB (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus GN=sucA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      R  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUA2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain 2308) GN=sucA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      R  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUA1 (2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain S19) GN=sucA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      R  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDARYNKDKGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_OCHA4 (2-oxoglutarate dehydrogenase E1 component OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  788 ARLERWLQMCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAVSTLNE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 929          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUSU (2-oxoglutarate dehydrogenase E1 component OS=Brucella suis GN=sucA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUSI (2-oxoglutarate dehydrogenase E1 component OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=sucA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUO2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_LEPIC1.480e-2635.372-oxoglutarate dehydrogenase E1 component OS=Lepto... [more]
ODO1_HAEIN1.926e-2637.412-oxoglutarate dehydrogenase E1 component OS=Haemo... [more]
ODO1_AZOVI3.495e-2537.412-oxoglutarate dehydrogenase E1 component OS=Azoto... [more]
ODO1_BRUAB2.019e-2444.142-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUA22.019e-2444.142-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUA12.019e-2444.142-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_OCHA43.443e-2443.452-oxoglutarate dehydrogenase E1 component OS=Ochro... [more]
ODO1_BRUSU4.497e-2443.452-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUSI4.497e-2443.452-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUO24.497e-2443.452-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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