CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUME (2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis GN=sucA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUMB (2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=sucA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BRUC2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=sucA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.497e-24
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C   N  + NVTTPA+YFH+LRRQ+   FRKPL +M+PK+LLR K   S L+E   + G   F +      +  KD       +  I R++LCSGKVYY+LYE R+K    D+ +  VEQL PFP   +  EL R+
Sbjct:  792 ARLERYLQLCAEDNMQVANVTTPANYFHILRRQMKRDFRKPLIMMTPKSLLRHKRAISTLAE---LSGESSFHRLLWDDAQYNKDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRF 933          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_RALEH (2-oxoglutarate dehydrogenase E1 component OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.002e-23
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            A ++  +Q C   N  +   TTPA  FH+LRRQ+   FRKPL +M+PK+LLR K+  S LS+    +GH         F+ +I DH + +  +  + R+I+CSGKVYY+L   RK+  A+D A+  +EQL PFP+  V  ELK+YPN
Sbjct:  742 ARIERFLQLCADHNMQVCQPTTPAQIFHLLRRQMIRLFRKPLVIMTPKSLLRNKDAVSPLSDL--AKGH---------FETVIPDHEELNASK--VKRVIMCSGKVYYDLVNTRKEREANDTAVIRLEQLYPFPHKAVAAELKKYPN 875          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCPA (2-oxoglutarate decarboxylase OS=Mycobacterium paratuberculosis GN=kgd PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.181e-23
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S++ +F +++     ++   T++  I D    S       R++L SGK+YYEL   + K +  D+AI  +EQL P P   +   L RYPN
Sbjct: 1063 STPSNYFHLLRRHALDGIKRPLIVFTPKSMLRNKAAVSDIKDFTEIKFRSVLEEP--TYEDGIGDRGKVS-------RVLLTSGKLYYELVARKNKDNRDDVAIVRIEQLAPLPKRRLGETLDRYPN 1180          

HSP 2 Score: 48.1358 bits (113), Expect = 5.181e-23
Identity = 18/29 (62.07%), Postives = 27/29 (93.10%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+SAR+ERFL +
Sbjct: 1023 SNVVLLLPHGHEGQGPDHTSARIERFLQL 1051          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCS2 (2-oxoglutarate decarboxylase OS=Mycobacterium smegmatis GN=kgd PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.182e-23
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD--HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TPA+YFH+LRR      ++PL V +PK++LR K   S++ +F +           + F+ ++++  + D       + RL+L SGK+YYEL   + K +  D+AI  +EQL P P   +   L RYPN
Sbjct: 1043 STPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPN 1160          

HSP 2 Score: 46.2098 bits (108), Expect = 5.182e-23
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+S R+ERFL +
Sbjct: 1003 SDVVLLLPHGHEGQGPDHTSGRIERFLQL 1031          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BUCAI (2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sucA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.207e-23
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N  I   TT +  FH+ R+QI     KPL + +PK+LLR     S+   FDD+  +  F K        I D  D+ + +E  IRLI CSGK+YY+L   R++   + I +  +EQL PFP   + + LK Y
Sbjct:  722 NMQICIPTTSSQIFHIFRKQIFDKILKPLIIFTPKSLLRNPMASSS---FDDLV-YGKFQK--------ILDEVDNVNKKE--IRLIFCSGKIYYDLLRNRREKKINSIILIRIEQLYPFPEGEILKILKNY 839          

HSP 2 Score: 54.6842 bits (130), Expect = 5.207e-23
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            ++S LVV+LPHGY+GQGPEHSS+R+ERFL +
Sbjct:  687 KKSNLVVLLPHGYEGQGPEHSSSRIERFLQL 717          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCSS (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain MCS) GN=kgd PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.739e-23
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD--HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TPA+YFH+LRR      ++PL V +PK++LR K   S++ +F + +           F+ ++++  + D       + R++L SGK+YYEL   + K S  D+AI  +EQL P P   +   L +YPN
Sbjct: 1084 STPANYFHLLRRHSLDGIQRPLIVFTPKSMLRNKAAVSDIRDFTEQK-----------FRSVLEEPTYTDGDGDRNKVTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPN 1201          

HSP 2 Score: 46.2098 bits (108), Expect = 6.739e-23
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+S R+ERFL +
Sbjct: 1044 SDVVLLLPHGHEGQGPDHTSGRIERFLQL 1072          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCSK (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain KMS) GN=kgd PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.739e-23
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD--HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TPA+YFH+LRR      ++PL V +PK++LR K   S++ +F + +           F+ ++++  + D       + R++L SGK+YYEL   + K S  D+AI  +EQL P P   +   L +YPN
Sbjct: 1084 STPANYFHLLRRHSLDGIQRPLIVFTPKSMLRNKAAVSDIRDFTEQK-----------FRSVLEEPTYTDGDGDRNKVTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPN 1201          

HSP 2 Score: 46.2098 bits (108), Expect = 6.739e-23
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+S R+ERFL +
Sbjct: 1044 SDVVLLLPHGHEGQGPDHTSGRIERFLQL 1072          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCSJ (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain JLS) GN=kgd PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.739e-23
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD--HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TPA+YFH+LRR      ++PL V +PK++LR K   S++ +F + +           F+ ++++  + D       + R++L SGK+YYEL   + K S  D+AI  +EQL P P   +   L +YPN
Sbjct: 1079 STPANYFHLLRRHSLDGIQRPLIVFTPKSMLRNKAAVSDIRDFTEQK-----------FRSVLEEPTYTDGDGDRNKVTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPN 1196          

HSP 2 Score: 46.2098 bits (108), Expect = 6.739e-23
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+S R+ERFL +
Sbjct: 1039 SDVVLLLPHGHEGQGPDHTSGRIERFLQL 1067          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_BRUME4.497e-2443.452-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUMB4.497e-2443.452-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUC24.497e-2443.452-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_RALEH1.002e-2342.862-oxoglutarate dehydrogenase E1 component OS=Ralst... [more]
KGD_MYCPA5.181e-2335.432-oxoglutarate decarboxylase OS=Mycobacterium para... [more]
KGD_MYCS25.182e-2334.882-oxoglutarate decarboxylase OS=Mycobacterium smeg... [more]
ODO1_BUCAI5.207e-2337.122-oxoglutarate dehydrogenase E1 component OS=Buchn... [more]
KGD_MYCSS6.739e-2334.112-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
KGD_MYCSK6.739e-2334.112-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
KGD_MYCSJ6.739e-2334.112-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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