CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCUA (2-oxoglutarate decarboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=kgd PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.741e-23
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S++ +F +++     ++   T++  + D N        + R++L SGK+YYE+   + K    D+AI  VEQL P P   ++  L RYPN
Sbjct: 1054 STPSNYFHLLRRHALDGIQRPLIVFTPKSMLRNKAAVSDIKDFTEIKFRSVLEEP--TYEDGVGDRNL-------VNRILLTSGKIYYEMVARKAKDKREDVAIVRVEQLAPLPRRRLRETLDRYPN 1171          

HSP 2 Score: 46.595 bits (109), Expect = 6.741e-23
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+S R+ERFL +
Sbjct: 1014 SNVVLLLPHGHEGQGPDHTSGRIERFLQL 1042          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACP2 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus pumilus (strain SAFR-032) GN=odhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.809e-23
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE--*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ     R   +PL +M+PK+LLR     S + E  D Q  P  ++ G     L+ DH       E + RL+L SGKV  ++ +   + +     + I  VEQL PFP   ++  L +  N
Sbjct:  749 NWTVANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNSLSEVQELTDGQFQPVLEQPG-----LVHDH-------EKVSRLVLSSGKVSIDISDRFTQMEEPKDWLHIARVEQLYPFPAKDIKAILSKLTN 875          

HSP 2 Score: 56.9954 bits (136), Expect = 8.809e-23
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSS R ERFL  + +N + +  +
Sbjct:  714 QKSGLVMLLPHGYEGQGPEHSSGRTERFLQSAAENNWTVANL 755          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACSU (2-oxoglutarate dehydrogenase E1 component OS=Bacillus subtilis GN=odhA PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.146e-22
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKK--HSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ     R   +PL +M+PK+LLR     S + E  + +  P +++ G     L  D+       E + RL+L SGKV  ++ +   K       + I  +EQL PFP   V+    + PN
Sbjct:  749 NWTVANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNTVSEVQELSESRFQPVYEQSG-----LSHDY-------EKVTRLVLSSGKVSIDISDHFNKLEDGKEWLHIARIEQLYPFPAKGVKELFAKLPN 875          

HSP 2 Score: 59.3066 bits (142), Expect = 1.146e-22
Identity = 23/42 (54.76%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSS R+ERFL ++ +N + +  +
Sbjct:  714 QKSGLVMLLPHGYEGQGPEHSSGRIERFLQLAAENNWTVANL 755          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCTU (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis GN=kgd PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 1.485e-22
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S + +F +++     ++   T++  I D N  S       R++L SGK+YYEL   + K + +D+AI  +EQL P P   ++  L RY N
Sbjct: 1047 STPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEIKFRSVLEEP--TYEDGIGDRNKVS-------RILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYEN 1164          

HSP 2 Score: 48.1358 bits (113), Expect = 1.485e-22
Identity = 18/29 (62.07%), Postives = 27/29 (93.10%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+SAR+ERFL +
Sbjct: 1007 SNVVLLLPHGHEGQGPDHTSARIERFLQL 1035          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCTA (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=kgd PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.485e-22
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S + +F +++     ++   T++  I D N  S       R++L SGK+YYEL   + K + +D+AI  +EQL P P   ++  L RY N
Sbjct: 1047 STPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEIKFRSVLEEP--TYEDGIGDRNKVS-------RILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYEN 1164          

HSP 2 Score: 48.1358 bits (113), Expect = 1.485e-22
Identity = 18/29 (62.07%), Postives = 27/29 (93.10%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+SAR+ERFL +
Sbjct: 1007 SNVVLLLPHGHEGQGPDHTSARIERFLQL 1035          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCBP (2-oxoglutarate decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=kgd PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.485e-22
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S + +F +++     ++   T++  I D N  S       R++L SGK+YYEL   + K + +D+AI  +EQL P P   ++  L RY N
Sbjct: 1047 STPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEIKFRSVLEEP--TYEDGIGDRNKVS-------RILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYEN 1164          

HSP 2 Score: 48.1358 bits (113), Expect = 1.485e-22
Identity = 18/29 (62.07%), Postives = 27/29 (93.10%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+SAR+ERFL +
Sbjct: 1007 SNVVLLLPHGHEGQGPDHTSARIERFLQL 1035          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCBO (2-oxoglutarate decarboxylase OS=Mycobacterium bovis GN=kgd PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.485e-22
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S + +F +++     ++   T++  I D N  S       R++L SGK+YYEL   + K + +D+AI  +EQL P P   ++  L RY N
Sbjct: 1047 STPSNYFHLLRRHALDGIQRPLIVFTPKSMLRHKAAVSEIKDFTEIKFRSVLEEP--TYEDGIGDRNKVS-------RILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYEN 1164          

HSP 2 Score: 48.1358 bits (113), Expect = 1.485e-22
Identity = 18/29 (62.07%), Postives = 27/29 (93.10%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+SAR+ERFL +
Sbjct: 1007 SNVVLLLPHGHEGQGPDHTSARIERFLQL 1035          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACCQ (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain Q1) GN=odhA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.283e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGMK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872          

HSP 2 Score: 58.9214 bits (141), Expect = 3.283e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACC7 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain AH187) GN=odhA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.283e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGMK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872          

HSP 2 Score: 58.9214 bits (141), Expect = 3.283e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACA2 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus amyloliquefaciens (strain FZB42) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.272e-22
Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD--IAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ     R   +PL +M+PK+LLR     S + E  + +  P +++ G             S   E + R++L SGKV  ++ +   K       + I  +EQL PFP    +    + PN
Sbjct:  749 NWTVANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNTVSEVQELSESRFKPVYEQSGL------------SHAYEKVTRVVLSSGKVSIDISDHFNKMEGDKDWLHIARIEQLYPFPAKDTKELFAKLPN 875          

HSP 2 Score: 58.9214 bits (141), Expect = 4.272e-22
Identity = 23/42 (54.76%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSS R+ERFL ++ +N + +  +
Sbjct:  714 QKSGLVMLLPHGYEGQGPEHSSGRVERFLQLAAENNWTVANL 755          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
KGD_MYCUA6.741e-2334.652-oxoglutarate decarboxylase OS=Mycobacterium ulce... [more]
ODO1_BACP28.809e-2334.532-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACSU1.146e-2233.092-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
KGD_MYCTU1.485e-2235.432-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCTA1.485e-2235.432-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCBP1.485e-2235.432-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
KGD_MYCBO1.485e-2235.432-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
ODO1_BACCQ3.283e-2230.502-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACC73.283e-2230.502-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACA24.272e-2230.942-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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