CF834875 | Citrus Genome Database

Overview


Name	CF834875
Unique Name	CF834875
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	571

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACWK (2-oxoglutarate dehydrogenase E1 component OS=Bacillus weihenstephanensis (strain KBAB4) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + ++S  ++ +  VEQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGAK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYSLDEVHMVRVEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACHK (2-oxoglutarate dehydrogenase E1 component OS=Bacillus thuringiensis subsp. konkukian GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACCZ (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain ZK / E33L) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACCR (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 41/141 (29.08%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  ++ +  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGMK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEVHVVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACC4 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain B4264) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 41/141 (29.08%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  ++ +  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGMK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEVHVVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACC3 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain 03BB102) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACC1 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain ATCC 10987) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASVLGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACC0 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain AH820) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESDKHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACAN (2-oxoglutarate dehydrogenase E1 component OS=Bacillus anthracis GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  ++  + +  P  +++    K               + RL+L +GK+      E+   R +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTANQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGRHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACAC (2-oxoglutarate dehydrogenase E1 component OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1

Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  ++  + +  P  +++    K               + RL+L +GK+      E+   R +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTANQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGRHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3

Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750

The following BLAST results are available for this feature:

BLAST of CF834875 vs. ExPASy Swiss-Prot

BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
ODO1_BACWK	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACHK	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACCZ	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACCR	5.556e-22	29.08	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACC4	5.556e-22	29.08	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACC3	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACC1	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACC0	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACAN	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]
ODO1_BACAC	5.556e-22	30.50	2-oxoglutarate dehydrogenase E1 component OS=Bacil...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG