CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACAA (2-oxoglutarate dehydrogenase E1 component OS=Bacillus anthracis (strain A0248) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.556e-22
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  ++  + +  P  +++    K               + RL+L +GK+      E+   R +++  +I I  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTANQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGRHEYNLDEIHIVRIEQLYPFPAEKVQSIIKRFKN 872          

HSP 2 Score: 58.9214 bits (141), Expect = 5.556e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACLD (2-oxoglutarate dehydrogenase E1 component OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=odhA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 7.229e-22
Identity = 43/139 (30.94%), Postives = 66/139 (47.48%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD--IAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ     R   +PL +M+PK+LLR     S + E  +    P ++  G             S   + + RL+L SGKV  ++ +   K       + I  VE+L PFP   ++    + PN
Sbjct:  749 NWTVANLTSAAQYFHILRRQAKMLLREEIRPLIIMTPKSLLRNPNTVSEVQELSNSSFKPVYEMSGL------------SHQYDKVTRLVLSSGKVSIDISDHFNKMEGEKDWLHIARVEELYPFPAKHIKAIFSKLPN 875          

HSP 2 Score: 59.3066 bits (142), Expect = 7.229e-22
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLVV+LPHGY+GQGPEHSS R ERFL ++ +N + +  +
Sbjct:  714 QKSGLVVLLPHGYEGQGPEHSSGRTERFLQLAAENNWTVANL 755          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACC2 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus (strain G9842) GN=odhA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.403e-22
Identity = 41/141 (29.08%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  S+  + +  P  +++    K               + RL+L +GK+      E+   + +++  ++ +  +EQL PFP + VQ  +KR+ N
Sbjct:  744 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVLMTPKSLLRHPLTLSTASQLSEGRFQPALEQENLGTK------------PNKVKRLVLSTGKMAIDLAAEIESGKHEYNLDEVHVVRIEQLYPFPAEKVQSIIKRFKN 872          

HSP 2 Score: 58.9214 bits (141), Expect = 9.403e-22
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  709 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 750          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCLE (2-oxoglutarate decarboxylase OS=Mycobacterium leprae GN=kgd PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.584e-21
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD--HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TP++YFH+LRR      ++PL V +PK++LR K   S++ +F +++           F+ ++++  + D  D    + R++L  GK+YYEL   + K +  D+AI  +EQL P P   +   L RY N
Sbjct: 1055 STPSNYFHLLRRHALDGIKRPLIVFTPKSMLRNKAAVSDIKDFTEIK-----------FRSVLEEPTYEDSIDDRSKVTRVLLTCGKLYYELAARKIKDNRDDVAIVRIEQLAPLPRRRLGETLDRYEN 1172          

HSP 2 Score: 45.8246 bits (107), Expect = 1.584e-21
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFLHM 101
            S +V++LPHG++GQGP+H+S R+ERFL +
Sbjct: 1015 STVVLLLPHGHEGQGPDHTSGRIERFLQL 1043          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_EXISA (2-oxoglutarate dehydrogenase E1 component OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=odhA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.692e-21
Identity = 41/139 (29.50%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE--*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+++ A YFH+LRRQ     +   +P+ +M+PK+LLR     S +  F +    P  ++ G              +  E + RL+ C+GK+  +L E   + + S   + I  VE++ PFP   ++  + RYPN
Sbjct:  741 NWTVANLSSAAQYFHILRRQAEMLGKEEIRPMIIMTPKSLLRHPLATSPVEAFTEESFKPIVEQPGL------------GENTEKVERLVFCTGKMAIDLAEAVGKSEESLDFLHIVRVEEIYPFPVREIRDVISRYPN 867          

HSP 2 Score: 56.9954 bits (136), Expect = 2.692e-21
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR+ER+L ++ +  + +  +
Sbjct:  706 QKSGLVMLLPHGYEGQGPEHSSARMERYLTLAGEKNWTVANL 747          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_GEOKA (2-oxoglutarate dehydrogenase E1 component OS=Geobacillus kaustophilus GN=odhA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.692e-21
Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD-IAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N++T A YFH+LRRQ     R   +PL +M+PK+LLR     S+   F D    P  ++ G           D   +E    R++  +GK+  +L E   K  + D + I  +E+L PFP + V+  + RYPN
Sbjct:  756 NWTVANLSTAAQYFHILRRQAALLTREEVRPLIIMTPKSLLRHPLAASDAEVFVDGAFSPVLEQPGL--------GADAGKVE----RIVFGTGKLMIDLAEQIGKMESLDWLHIVRIEELYPFPEEAVKDIIARYPN 881          

HSP 2 Score: 58.9214 bits (141), Expect = 2.692e-21
Identity = 23/42 (54.76%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSS R+ERFL ++ +N + +  +
Sbjct:  721 QKSGLVMLLPHGYEGQGPEHSSGRVERFLQLAAENNWTVANL 762          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BUCBP (Oxoglutarate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sucA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.505e-21
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            N  I+  T  +  +H++R+Q     +KPL +MSPK+LLR     S+LSE  + +             R + D  D+ D ++ + R+ILCSGK+YY+L   R+ +   +I I  +EQ+ P P   +   L  Y
Sbjct:  727 NIKIIIPTISSQIYHIIRKQAFSLIKKPLIIMSPKSLLRFPLAASSLSELSNGK------------FRTVIDEIDNLDTKK-VQRIILCSGKIYYDLLTQRRINQQKNIVILRIEQIYPRPTKKLSAILYNY 845          

HSP 2 Score: 54.299 bits (129), Expect = 3.505e-21
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 3
Query:   21 LVVMLPHGYDGQGPEHSSARLERFLHMSDDN 113
            LV++LPHGY+GQGPEHSSAR+ER+L +S +N
Sbjct:  696 LVMLLPHGYEGQGPEHSSARIERYLQLSANN 726          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACCN (2-oxoglutarate dehydrogenase E1 component OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=odhA PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.925e-21
Identity = 43/141 (30.50%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYY----ELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N+T+ A YFH+LRRQ   +     +PL +M+PK+LLR     S  SE  +    P  +++    K               + RLI  +GK+      E+   + +++  ++ I  +EQL PFP + VQ  +KR+ N
Sbjct:  747 NWTVANLTSAAQYFHILRRQASILGTEAVRPLVIMTPKSLLRHPLTASTGSELSEGCFQPALEQEKLGTK------------PTKVKRLIFTTGKMAIDLAAEIESGKHEYNLDELHIVRIEQLYPFPAEKVQSIIKRFKN 875          

HSP 2 Score: 58.9214 bits (141), Expect = 5.925e-21
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    9 RQSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVIPEM 134
            ++SGLV++LPHGY+GQGPEHSSAR ERFL ++ +N + +  +
Sbjct:  712 QKSGLVLLLPHGYEGQGPEHSSARPERFLQLAAENNWTVANL 753          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: KGD_MYCVP (2-oxoglutarate decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=kgd PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.672e-21
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  190 TTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            +TPA+YFH+LRR       +PL V +PK++LR K   S+L +F +++     ++   T     +   D S  +    R++L SGK+YYEL   + K    D+AI  +EQL P P   +   L  YPN
Sbjct: 1059 STPANYFHLLRRHGLDGIHRPLIVFTPKSMLRNKAAVSDLKDFTEMKFRSVLEEPTYT-----EGTGDRSKAK----RILLTSGKLYYELAARKSKEGRDDVAILRLEQLAPLPKRRLAATLDEYPN 1176          

HSP 2 Score: 45.4394 bits (106), Expect = 7.672e-21
Identity = 17/27 (62.96%), Postives = 25/27 (92.59%), Query Frame = 3
Query:   15 SGLVVMLPHGYDGQGPEHSSARLERFL 95
            S +V++LPHG++GQGP+H+S R+ERFL
Sbjct: 1019 SDVVLLLPHGHEGQGPDHTSGRIERFL 1045          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_COXBU (2-oxoglutarate dehydrogenase E1 component OS=Coxiella burnetii GN=sucA PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 60/149 (40.27%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSA--SDIAICMVEQLCPFPYDLVQRELKRYPN 570
            A L+  +Q C   N  +   TTP+  FH+LRRQ+   +RKPL V++PK++LR K   S+L +    Q            K LI +   H    + I R+ILCSGKVYY+L   R++H    + IA+  +EQL PFPYD ++ EL++YPN
Sbjct:  732 ARLERYLQLCAQNNMQVCAPTTPSQIFHLLRRQVLRPYRKPLVVLTPKSVLRNKLAVSSLEDLARGQ-----------LKLLIPEIEKHD--PKKITRVILCSGKVYYDLLAKRREHKGKLNHIAMIRIEQLYPFPYDELKAELEKYPN 867          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_BACAA5.556e-2230.502-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACLD7.229e-2230.942-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACC29.403e-2229.082-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
KGD_MYCLE1.584e-2132.562-oxoglutarate decarboxylase OS=Mycobacterium lepr... [more]
ODO1_EXISA2.692e-2129.502-oxoglutarate dehydrogenase E1 component OS=Exigu... [more]
ODO1_GEOKA2.692e-2133.332-oxoglutarate dehydrogenase E1 component OS=Geoba... [more]
ODO1_BUCBP3.505e-2132.58Oxoglutarate dehydrogenase OS=Buchnera aphidicola ... [more]
ODO1_BACCN5.925e-2130.502-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
KGD_MYCVP7.672e-2135.432-oxoglutarate decarboxylase OS=Mycobacterium vanb... [more]
ODO1_COXBU5.145e-2040.272-oxoglutarate dehydrogenase E1 component OS=Coxie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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