CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_OCEIH (2-oxoglutarate dehydrogenase E1 component OS=Oceanobacillus iheyensis GN=odhA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.311e-20
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 3
Query:   12 QSGLVVMLPHGYDGQGPEHSSARLERFLHMSDDNPYVI 125
            +S +V++LPHGY+GQGPEHSSARLERFL M+ +N +++
Sbjct:  715 KSNMVLLLPHGYEGQGPEHSSARLERFLQMAAENNWIV 752          

HSP 2 Score: 58.151 bits (139), Expect = 6.311e-20
Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FR---KPLSVMSPK-NLLRRKECKSNLSEFDD-----VQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*R--KKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + NVT+ A  FH+LRRQ     R   +PL +M+PK +L+R     +   EF D     ++  PGF+                    E + RL++ SGK+  ++ E       +   + I  VEQ+ PFP   ++ E+K+ PN
Sbjct:  749 NWIVANVTSSAQLFHILRRQAAMRDRDEARPLVLMTPKSSLIRHPRMGATAEEFTDGGFLALRDQPGFEAN-----------------REKVTRLVVGSGKMMIDIEEAMDDSDETYDWLQIKRVEQIYPFPKKALEEEIKQLPN 876          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_SCHPO (2-oxoglutarate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=kgd1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  145 LQTRIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDL--EEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            LQ + Q CN   + VT P+ YFH LRR IH  FRKPL +   K+LLR    +S + EFD+  G          FK ++++      +   E I +LI+CSG+V+  L + R+++   +IAI  VEQL PF +  +   + +YPN
Sbjct:  807 LQRQHQDCNIQAIYVTKPSQYFHALRRNIHRQFRKPLVIFFSKSLLRHPAARSTIDEFDEKHG----------FKLILEEEEHGKSILPPEKIEKLIICSGQVWVALSKAREENKIDNIAITRVEQLHPFGWKQMAANISQYPN 940          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_DANRE (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Danio rerio GN=dhtkd1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RK--KHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            N  +VN T PA YFH+LRRQ+   FRKPL V SPK LLR     S LS+             GT+FK +I    D S     + R++ CSGK YY L + R+    +  + A+  VE+LCPFP + +Q+EL +Y N
Sbjct:  734 NMAVVNPTLPAQYFHLLRRQMIRNFRKPLIVASPKTLLRFSGAVSGLSDMG----------PGTSFKPII---GDSSVNPASVQRVLFCSGKHYYALLKHRETIPEAEKNTALVRVEELCPFPTEALQQELNKYTN 856          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_YEAST (2-oxoglutarate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=KGD1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.823e-18
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  145 LQTRIQKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKD--HNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            LQ + Q CN+ +V  TTPA+ FH+LRRQ H  FRKPL++   K LLR    +S+LSEF +             F+ +I+D  H      +E   RL+L SG+VY  L++ R+       A   +EQL PFP+  ++  L  YPN
Sbjct:  809 LQRQHQDCNFQVVYPTTPANLFHILRRQQHRQFRKPLALFFSKQLLRHPLARSSLSEFTE-----------GGFQWIIEDIEHGKSIGTKEETKRLVLLSGQVYTALHKRRESLGDKTTAFLKIEQLHPFPFAQLRDSLNSYPN 941          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: DHTK1_CAEEL (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Caenorhabditis elegans GN=ZK836.2 PE=2 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  160 QKCNWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD-IAICMVEQLCPFPYDLVQRELKRYP 567
            +  N  + N TT A YFH+LRRQ+   +RKPL V+ PK LLR  +  S ++EF            GTT++ +I +  +H+   + I ++I  SGK +  + + R +    D +AI  VE LCPFP   +Q  LK+YP
Sbjct:  722 ENVNMRVANPTTSAQYFHLLRRQVVPNYRKPLIVVGPKILLRHPKAASTINEFG----------PGTTYQNVISE--EHATSSQKIKKVIFVSGKHWINVEKARDERGLKDSVAIVRVEMLCPFPVVDLQAVLKKYP 846          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_CORGL (2-oxoglutarate dehydrogenase E1 component OS=Corynebacterium glutamicum GN=odhA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 47/147 (31.97%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  139 ATLQTRIQKC---NWHIVNVTTPASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            A ++  +Q C   +  +   +TPA++FH+LRR      ++PL + +PK++LR K   S   +F +V          T F+ +I D N     +  + +++L SGK+YYEL + ++K    DIAI  +E L P P++ +   L  YPN
Sbjct: 1056 ARIERFLQLCAEGSMTVAQPSTPANHFHLLRRHALSDLKRPLVIFTPKSMLRNKAAASAPEDFTEV----------TKFQSVINDPNVADAAK--VKKVMLVSGKLYYELAKRKEKDGRDDIAIVRIEMLHPIPFNRISEALAGYPN 1190          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BUCAP (2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sucA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  139 ATLQTRIQKCNWHIVNVTTP---ASYFHVLRRQIHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRY 564
            A L+  +Q C  + + V  P   +  FH+LRRQI     KPL V++PK+LLR    +S+L    +             FK +I   N+    ++ + R+I CSGK+YY+L E R K   +++ +  +EQL PFP D +   LK Y
Sbjct:  721 ARLERFLQLCAENNIQVCIPTVSSQIFHLLRRQIFSNVYKPLIVLTPKSLLRNNVARSSLEVLVN-----------ENFKNVI---NEIDKNQKEVKRIIFCSGKIYYDLLEYRNKCDINNVLLIRIEQLYPFPKDEILTILKSY 851          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACHD (2-oxoglutarate dehydrogenase E1 component OS=Bacillus halodurans GN=odhA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASD---IAICMVEQLCPFPYDLVQRELKRYPN 570
            NW I N T+ A YFH+LRRQ   ++    +PL +M+PK+LLR ++  S++ E    +           FK +++  N   +  E + R++LCSGK+  +L +  +K +  D   + I  VEQL PFP + +Q    RYPN
Sbjct:  751 NWTIANCTSAAQYFHILRRQAAILNTDSVRPLIMMTPKSLLRNQKVASSVEELTTGR-----------FKTVLEQPN-LGESHEKVERIVLCSGKIAIDLQDRIEKEADKDWDWVHIVRVEQLYPFPKEPLQEIFARYPN 878          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_BACSK (2-oxoglutarate dehydrogenase E1 component OS=Bacillus clausii (strain KSM-K16) GN=odhA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYEL--YE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            NW + N T+ A YFH+LRRQ   +     +PL +M+PK+LLR +   S  S F + +  P  ++       L  D N        + R+ILCSGK+  EL  Y  +     S + I  VE+L PFP   ++  LK +PN
Sbjct:  748 NWTVANCTSAAQYFHILRRQAKILQKNTVRPLIIMTPKSLLRNQVVASPTSAFTEGEFQPILEE-----PTLGHDPN-------AVKRIILCSGKLAIELQDYVNKNDEDWSWVHIIRVEELYPFPRRAIRERLKEFPN 874          
BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_STAES (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            N  +VN+++ ++YFH+LR Q   +     +PL VMSPK+LLR K     + EF               FK +I +  D    E+ + ++IL SGK+Y +L E   K+    I +  VE+L PFP + ++  LK  P+
Sbjct:  746 NSTVVNLSSASNYFHLLRAQAASLDTLEMRPLIVMSPKSLLRNKTVAKPIDEFTS-----------GGFKPIITEDID----EQKVKKVILASGKMYIDLKEYLAKNPNDSILLIAVERLYPFPEEEIKEVLKSLPH 867          
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_OCEIH6.311e-2063.162-oxoglutarate dehydrogenase E1 component OS=Ocean... [more]
ODO1_SCHPO1.955e-1937.502-oxoglutarate dehydrogenase, mitochondrial OS=Sch... [more]
DHTK1_DANRE1.655e-1841.91Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_YEAST2.823e-1838.892-oxoglutarate dehydrogenase, mitochondrial OS=Sac... [more]
DHTK1_CAEEL1.549e-1637.23Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_CORGL1.450e-1431.972-oxoglutarate dehydrogenase E1 component OS=Coryn... [more]
ODO1_BUCAP5.510e-1434.482-oxoglutarate dehydrogenase E1 component OS=Buchn... [more]
ODO1_BACHD9.398e-1435.002-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACSK3.949e-1235.252-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_STAES9.726e-1133.582-oxoglutarate dehydrogenase E1 component OS=Staph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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